Construct: ORF ccsbBroadEn_04526
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011343.1_s300c1, BRDN0000398348
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TBL1Y (90665)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 90665 | TBL1Y | transducin beta like 1 Y-li... | NM_033284.2 | 100% | 100% | |
| 2 | human | 90665 | TBL1Y | transducin beta like 1 Y-li... | NM_134258.1 | 100% | 100% | |
| 3 | human | 90665 | TBL1Y | transducin beta like 1 Y-li... | NM_134259.1 | 100% | 100% | |
| 4 | human | 90665 | TBL1Y | transducin beta like 1 Y-li... | XM_017030087.1 | 96.4% | 95.7% | (many diffs) |
| 5 | human | 90665 | TBL1Y | transducin beta like 1 Y-li... | XM_005262572.3 | 94.2% | 93.1% | (many diffs) |
| 6 | human | 6907 | TBL1X | transducin beta like 1 X-li... | NM_001139467.1 | 90.4% | 90.6% | (many diffs) |
| 7 | human | 6907 | TBL1X | transducin beta like 1 X-li... | NM_001139468.1 | 90.4% | 90.6% | (many diffs) |
| 8 | human | 90665 | TBL1Y | transducin beta like 1 Y-li... | XM_017030086.1 | 90.2% | 89.6% | (many diffs) |
| 9 | human | 90665 | TBL1Y | transducin beta like 1 Y-li... | XM_024452497.1 | 90.2% | 89.6% | (many diffs) |
| 10 | human | 6907 | TBL1X | transducin beta like 1 X-li... | NM_001139466.1 | 82.4% | 82.6% | (many diffs) |
| 11 | human | 6907 | TBL1X | transducin beta like 1 X-li... | NM_005647.4 | 82.4% | 82.6% | (many diffs) |
| 12 | mouse | 21372 | Tbl1x | transducin (beta)-like 1 X-... | NM_020601.2 | 85.6% | 92.9% | (many diffs) |
| 13 | mouse | 21372 | Tbl1x | transducin (beta)-like 1 X-... | XM_006527939.2 | 85.6% | 92.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1635
- ORF length:
- 1566
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAGCATAACC AGTGACGAGG TGAACTTTCT GGTTTATCGG TATCTCCAGG 121 AGTCAGGTTT TTCTCACTCG GCTTTCACGT TTGGGATCGA GAGCCACATC AGCCAGTCCA 181 ACATCAATGG GACACTAGTG CCACCGTCTG CCCTCATCTC CATTCTCCAG AAGGGACTGC 241 AGTATGTAGA GGCTGAGATA AGCATCAACA AGGATGGCAC AGTGTTCGAC AGCCGCCCTA 301 TAGAGTCCCT GTCCCTGATA GTTGCTGTGA TTCCTGATGT GGTGCAGATG CGGCAGCAGG 361 CATTTGGAGA GAAGCTCACT CAGCAGCAAG CCAGTGCAGC AGCCACAGAG GCATCAGCAA 421 TGGCAAAGGC GGCAACCATG ACCCCAGCTG CTATTTCCCA GCAAAATCCT CCAAAGAACC 481 GAGAGGCCAC AGTGAACGGG GAAGAGAATG GAGCACATGA AATCAATAAT CACTCAAAGC 541 CAATGGAAAT AGATGGGGAT GTTGAGATTC CACCCAACAA AGCCACAGTC CTTCGGGGCC 601 ACGAGTCTGA GGTGTTCATT TGTGCCTGGA ACCCTGTCAG TGATTTGCTA GCCTCTGGAT 661 CTGGAGACTC AACTGCAAGG ATATGGAACC TGAATGAGAA TAGCAACGGG GGCTCCACCC 721 AGCTCGTGTT GAGACATTGT ATACGAGAAG GGGGGCACGA CGTCCCAAGT AATAAAGATG 781 TCACCTCACT GGACTGGAAC AGTGATGGAA CACTATTGGC TATGGGTTCA TATGATGGTT 841 TCGCAAGAAT ATGGACAGAA AATGGTAACC TGGCCAGCAC CTTAGGCCAA CATAAAGGCC 901 CCATCTTCGC TCTGAAATGG AACAAAAAGG GGAATTATGT TTTGAGTGCT GGTGTAGACA 961 AAACAACAAT AATTTGGGAT GCTCACACAG GAGAAGCCAA ACAGCAGTTT CCTTTTCATT 1021 CAGCCCCCGC CCTTGATGTG GACTGGCAGA ACAACATGAC CTTTGCCTCC TGTAGCACAG 1081 ACATGTGTAT CCATGTGTGC AGGCTCGGCT GTGACCACCC AGTCAAAACC TTCCAGGGAC 1141 ACACAAACGA GGTCAATGCC ATCAAATGGG ATCCTTCTGG AATGTTGCTG GCGTCCTGCT 1201 CGGATGACAT GACATTGAAG ATCTGGAGTA TGAAGCAGGA TGCATGCGTC CACGATCTTC 1261 AGGCTCACAG CAAAGAGATC TACACCATCA AGTGGAGCCC CACCGGGCCT GCCACCAGCA 1321 ACCCAAACTC CAGCATCATG TTGGCAAGTG CTTCATTTGA TTCTACAGTG CGACTGTGGG 1381 ATGTGGAGCA AGGTGTCTGC ACCCACACAC TCATGAAGCA TCAAGAGCCT GTCTACAGTG 1441 TAGCTTTCAG CCCCGATGGA AAGTACTTGG CTAGTGGATC CTTTGACAAG TATGTTCATA 1501 TCTGGAATAC TCAGAGTGGA AGTCTCGTCC ACAGCTACCA AGGCACTGGC GGTATCTTCG 1561 AGGTGTGCTG GAACGCCCGA GGAGATAAAG TGGGCGCCAG CGCGTCTGAT GGCTCTGTGT 1621 GTGTTCTGGA TCTGTTGCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 1681 tatcaatttg ttgcaacgaa c