Transcript: Human NM_005647.4

Homo sapiens transducin beta like 1 X-linked (TBL1X), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-29
Taxon:
Homo sapiens (human)
Gene:
TBL1X (6907)
Length:
5818
CDS:
591..2324

Additional Resources:

NCBI RefSeq record:
NM_005647.4
NBCI Gene record:
TBL1X (6907)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_005647.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000118647 GCGTAGTAAGTGCTTTATGTA pLKO.1 3232 3UTR 100% 5.625 7.875 N TBL1X n/a
2 TRCN0000310425 GCGTAGTAAGTGCTTTATGTA pLKO_005 3232 3UTR 100% 5.625 7.875 N TBL1X n/a
3 TRCN0000118648 CAGTCAGTCTTGCACCACTTT pLKO.1 654 CDS 100% 4.950 6.930 N TBL1X n/a
4 TRCN0000118651 GAATACCAATGGAACACTCTT pLKO.1 1478 CDS 100% 4.950 3.960 N TBL1X n/a
5 TRCN0000299581 GAATACCAATGGAACACTCTT pLKO_005 1478 CDS 100% 4.950 3.960 N TBL1X n/a
6 TRCN0000303716 ATGATCTTCAGGCTCACAATA pLKO_005 1933 CDS 100% 13.200 9.240 N TBL1X n/a
7 TRCN0000118649 CTTCGACAAGTGCGTCCATAT pLKO.1 2162 CDS 100% 10.800 7.560 N TBL1X n/a
8 TRCN0000299525 CTTCGACAAGTGCGTCCATAT pLKO_005 2162 CDS 100% 10.800 7.560 N TBL1X n/a
9 TRCN0000118650 GAGATCAGTATCAACGAGGAT pLKO.1 930 CDS 100% 2.640 1.848 N TBL1X n/a
10 TRCN0000299582 GAGATCAGTATCAACGAGGAT pLKO_005 930 CDS 100% 2.640 1.848 N TBL1X n/a
11 TRCN0000153227 GAGACTCAACTGCAAGGATAT pLKO.1 1345 CDS 100% 10.800 5.400 Y TBL1Y n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_005647.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04526 pDONR223 100% 82.4% 82.6% None (many diffs) n/a
2 ccsbBroad304_04526 pLX_304 0% 82.4% 82.6% V5 (many diffs) n/a
3 TRCN0000466084 ACACCCCAAGATTCCCCTAAGATG pLX_317 20.9% 82.4% 82.6% V5 (many diffs) n/a
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