Construct: ORF ccsbBroadEn_04718
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009490.1_s300c1, BRDN0000389339
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RPL39L (116832)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 116832 | RPL39L | ribosomal protein L39 like | NM_052969.3 | 100% | 100% | |
| 2 | human | 6170 | RPL39 | ribosomal protein L39 | NM_001000.4 | 94.7% | 92.1% | (many diffs) |
| 3 | human | 170958 | ZNF525 | zinc finger protein 525 | NR_145447.2 | 7.3% | (many diffs) | |
| 4 | human | 170958 | ZNF525 | zinc finger protein 525 | NR_145446.2 | 6.4% | (many diffs) | |
| 5 | human | 388558 | ZNF808 | zinc finger protein 808 | XR_935832.3 | 3.1% | (many diffs) | |
| 6 | human | 388558 | ZNF808 | zinc finger protein 808 | XR_002958314.1 | 3% | (many diffs) | |
| 7 | human | 170958 | ZNF525 | zinc finger protein 525 | NR_145445.2 | 2.6% | (many diffs) | |
| 8 | mouse | 68172 | Rpl39l | ribosomal protein L39-like | NM_026594.2 | 88.2% | 90.1% | (many diffs) |
| 9 | mouse | 68172 | Rpl39l | ribosomal protein L39-like | XM_006522506.3 | 88.2% | 90.1% | (many diffs) |
| 10 | mouse | 67248 | Rpl39 | ribosomal protein L39 | NM_026055.2 | 86.2% | 92.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 219
- ORF length:
- 153
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC TTCTCACAAG ACTTTCACCA TTAAGCGATT CCTGGCCAAG AAACAAAAGC 121 AAAATCGTCC CATCCCCCAG TGGATTCAGA TGAAACCTGG TAGTAAAATC AGGTACAACT 181 CCAAAAGGAG GCATTGGAGA AGAACCAAGC TGGGTCTATA CCCAACTTTC TTGTACAAAG 241 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac