Construct: ORF ccsbBroadEn_04735

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009873.1_s300c1, BRDN0000389842
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PDZD8 (118987)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 118987 PDZD8 PDZ domain containing 8 NM_173791.5 99.9% 100% 1041C>T
2 human 118987 PDZD8 PDZ domain containing 8 XM_005269518.4 96.4% 96.4% 869_870ins123;918C>T
3 human 118987 PDZD8 PDZ domain containing 8 XR_945601.2 35.2% (many diffs)
4 human 118987 PDZD8 PDZ domain containing 8 XM_011539265.2 32.2% 32% (many diffs)
5 human 118987 PDZD8 PDZ domain containing 8 XM_011539266.3 32.2% 32% (many diffs)
6 human 118987 PDZD8 PDZ domain containing 8 XR_945602.2 30.6% (many diffs)
7 mouse 107368 Pdzd8 PDZ domain containing 8 NM_001033222.3 86.6% 86.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3528
ORF length:
3462
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG GCTGCTGCTC ATGATCCTGG CGTCGGCCGT GCTGGGTTCC TTCCTCACGC
121TCCTCGCCCA GTTCTTCCTG CTGTACCGCA GACAGCCCGA GCCGCCGGCG GACGAGGCCG
181CCCGCGCGGG CGAGGGCTTC CGCTACATCA AGCCAGTGCC GGGCCTGCTC CTAAGGGAGT
241ACCTTTATGG CGGCGGCCGG GATGAGGAGC CCTCCGGAGC GGCCCCTGAG GGCGGCGCGA
301CCCCCACCGC GGCCCCCGAG ACCCCCGCCC CGCCGACGCG GGAGACTTGC TACTTCCTCA
361ACGCCACCAT CCTATTCCTG TTCCGGGAGT TGCGGGACAC CGCGCTGACC CGCCGCTGGG
421TCACCAAGAA GATCAAGGTG GAGTTCGAGG AGCTGCTGCA GACCAAGACG GCCGGGCGCC
481TGCTGGAGGG GCTGAGCCTG CGGGACGTGT TCCTGGGCGA GACGGTGCCC TTCATCAAGA
541CCATCCGGCT CGTGCGGCCA GTCGTGCCCT CGGCCACCGG GGAGCCCGAT GGCCCTGAAG
601GGGAGGCGCT GCCCGCCGCC TGCCCCGAGG AGCTGGCCTT CGAGGCGGAG GTGGAGTACA
661ACGGGGGCTT CCACCTGGCC ATCGACGTGG ACCTGGTCTT CGGCAAGTCC GCCTACTTGT
721TTGTCAAGCT GTCCCGCGTG GTGGGAAGGC TGCGCTTGGT CTTTACGCGC GTGCCCTTCA
781CCCACTGGTT CTTCTCCTTC GTGGAAGACC CGCTGATCGA CTTCGAGGTG CGCTCCCAGT
841TTGAAGGGCG GCCCATGCCC CAGCTCACCT CCATCATCGT CAACCAGCTC AAGAAGATCA
901TCAAGCGCAA GCACACCCTA CCGAATTACA AGATCAGGTT TAAGCCGTTT TTTCCATACC
961AGACCTTGCA AGGATTTGAA GAAGATGAAG AGCATATCCA TATACAACAA TGGGCACTTA
1021CTGAAGGCCG TCTTAAAGTT ACGTTGTTAG AATGTAGCAG GTTACTCATT TTTGGATCCT
1081ATGACAGAGA GGCAAATGTT CATTGTACAC TTGAGTTAAG CAGTAGTGTT TGGGAAGAAA
1141AACAGAGGAG TTCTATTAAG ACGGTTGAAT TAATAAAAGG AAATTTACAA AGTGTTGGAC
1201TTACACTTCG TCTTGTCCAG TCAACTGATG GGTATGCTGG GCACGTCATC ATTGAAACTG
1261TGGCTCCAAA CTCGCCTGCT GCAATTGCAG ATCTTCAGCG GGGAGATCGA CTTATCGCCA
1321TTGGAGGTGT GAAAATCACA TCAACACTGC AAGTGTTGAA GCTTATCAAG CAGGCTGGTG
1381ACCGAGTCCT GGTGTACTAT GAAAGGCCTG TTGGCCAGAG TAATCAAGGT GCAGTGCTGC
1441AAGATAACTT TGGCCAGTTG GAAGAAAACT TTTTGTCAAG CTCATGCCAA TCGGGTTATG
1501AAGAGGAAGC TGCCGGGTTG ACAGTAGATA CTGAAAGTAG AGAGCTGGAT TCTGAATTTG
1561AAGACTTGGC AAGTGATGTC AGAGCACAAA ATGAGTTCAA AGATGAGGCA CAATCATTAA
1621GTCATAGTCC CAAACGTGTT CCAACAACAC TTTCTATTAA ACCCCTTGGA GCTATATCAC
1681CAGTTTTAAA CCGTAAATTA GCTGTAGGAA GTCACCCACT ACCACCGAAA ATTCAGTCCA
1741AAGATGGAAA TAAACCTCCA CCCCTAAAAA CTTCTGAGAT AACAGACCCA GCACAAGTGT
1801CAAAACCAAC CCAAGGATCT GCTTTCAAAC CACCTGTGCC ACCACGACCA CAAGCGAAAG
1861TTCCTTTGCC TTCCGCCGAT GCTCCAAATC AGGCAGAACC AGATGTTCTC GTTGAAAAGC
1921CAGAGAAGGT GGTGCCACCT CCTCTTGTAG ATAAATCTGC TGAAAAGCAA GCAAAAAATG
1981TGGATGCCAT AGACGATGCA GCTGCACCTA AGCAATTTTT AGCAAAGCAA GAAGTGGCCA
2041AAGATGTCAC TTCAGAAACT TCCTGCCCTA CTAAGGACAG TTCGGACGAC CGTCAAACAT
2101GGGAATCATC AGAAATTCTT TATCGTAATA AGCTAGGAAA ATGGACAAGA ACCAGAGCAT
2161CCTGTTTGTT TGACATAGAA GCCTGTCACA GGTACTTAAA CATTGCATTG TGGTGCAGGG
2221ATCCTTTCAA GTTGGGAGGT CTCATCTGTT TGGGGCATGT TAGTTTAAAA CTTGAAGATG
2281TGGCTTTAGG ATGCCTAGCT ACATCAAACA CGGAATACCT TTCCAAATTG AGACTGGAAG
2341CCCCCTCACC TAAGGCTATA GTCACTAGAA CCGCACTACG CAATCTGAGT ATGCAAAAGG
2401GATTCAATGA CAAATTTTGC TATGGTGACA TTACTATTCA CTTCAAATAT TTGAAAGAAG
2461GAGAATCAGA CCACCATGTA GTTACTAACG TAGAAAAAGA AAAAGAACCC CATTTGGTTG
2521AAGAAGTTTC TGTTCTCCCT AAAGAGGAGC AATTTGTTGG ACAGATGGGT TTAACAGAAA
2581ACAAACACAG TTTTCAGGAT ACTCAGTTCC AGAACCCAAC ATGGTGTGAC TACTGTAAGA
2641AAAAAGTTTG GACTAAAGCA GCTTCCCAGT GTATGTTTTG TGCTTATGTT TGCCATAAAA
2701AATGTCAAGA AAAGTGTCTA GCTGAGACTT CTGTTTGTGG AGCAACTGAT AGGCGAATAG
2761ACAGGACACT GAAAAACCTT AGGCTGGAAG GACAGGAAAC CCTCTTAGGC CTGCCTCCTC
2821GTGTTGATGC TGAAGCTAGC AAGTCAGTCA ATAAAACAAC AGGTTTGACA AGGCATATTA
2881TCAATACTAG TTCTCGTTTA TTAAATTTGC GTCAAGTCTC TAAAACTCGC CTTTCTGAAC
2941CAGGAACCGA TCTCGTAGAA CCTTCACCAA AACACACACC CAACACGTCA GACAACGAAG
3001GCAGTGACAC GGAGGTCTGT GGTCCAAACA GTCCTTCTAA ACGGGGAAAC AGCACAGGAA
3061TAAAGTTAGT GAGAAAAGAG GGTGGTCTGG ATGACAGTGT TTTCATTGCA GTTAAAGAAA
3121TTGGTCGTGA TCTGTACAGG GGCTTGCCTA CAGAGGAAAG GATCCAGAAA CTAGAGTTCA
3181TGTTGGATAA GCTACAGAAT GAAATTGATC AGGAGTTGGA ACACAATAAT TCCCTTGTTA
3241GAGAAGAAAA AGAGACAACT GATACAAGGA AAAAATCACT TCTTTCTGCT GCCTTAGCTA
3301AATCAGGTGA AAGGCTACAA GCTCTAACAC TTCTTATGAT TCACTACAGA GCAGGCATTG
3361AAGATATAGA AACTTTAGAA AGTCTGTCTT TAGACCAGCA CTCCAAAAAA ATAAGCAAGT
3421ACACAGATGA TACAGAAGAA GACCTTGATA ATGAAATAAG CCAACTAATA GACTCTCAGC
3481CATTCAGCAG CATATCAGAT GACTTATTTG GCCCATCCGA GTCTGTGTAC CCAACTTTCT
3541TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)