Construct: ORF ccsbBroadEn_04879

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006151.1_s300c1, BRDN0000392192
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SYNPR (132204)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 132204 SYNPR synaptoporin NM_144642.5 100% 100%
2 human 132204 SYNPR synaptoporin NM_001130003.2 91.9% 90.1% (many diffs)
3 human 132204 SYNPR synaptoporin XM_017005731.1 87.2% 85.3% (many diffs)
4 human 132204 SYNPR synaptoporin XM_017005732.2 67% 57% (many diffs)
5 mouse 72003 Synpr synaptoporin NM_001163032.1 89.8% 95.8% (many diffs)
6 mouse 72003 Synpr synaptoporin NM_028052.4 81% 86.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
861
ORF length:
795
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTG TATGGTGATA TTTGCTCCGC TTTTTGCAAT CTTTGCATTT GCAACATGCG
121GTGGCTATTC TGGAGGCCTG CGGCTGAGTG TGGACTGCGT CAACAAGACA GAAAGTAACC
181TCAGCATCGA CATAGCGTTT GCCTACCCAT TCAGGTTGCA CCAGGTGACG TTTGAGGTGC
241CCACCTGCGA GGGAAAGGAA CGGCAGAAGC TGGCATTGAT TGGTGACTCC TCGTCTTCAG
301CAGAGTTCTT CGTCACTGTT GCTGTCTTCG CCTTCCTCTA CTCTTTGGCT GCCACTGTCG
361TTTACATTTT CTTCCAGAAC AAATACCGGG AAAACAACCG GGGCCCACTC ATTGACTTCA
421TTGTCACTGT AGTCTTTTCG TTCTTGTGGT TGGTGGGTTC ATCAGCTTGG GCAAAAGGAC
481TGTCTGACGT CAAAGTTGCA ACGGATCCCA AGGAAGTATT GCTACTAATG TCAGCTTGCA
541AACAGCCATC CAACAAATGC ATGGCTATCC ACAGCCCTGT TATGTCAAGC TTAAACACTT
601CTGTGGTCTT TGGATTCTTG AACTTTATTC TCTGGGCTGG AAACATATGG TTTGTTTTCA
661AGGAGACCGG CTGGCATTCT TCGGGACAGA GATATCTTTC AGATCCAATG GAGAAGCACT
721CCAGCAGCTA TAATCAAGGT GGTTACAACC AAGACAGCTA TGGATCAAGC AGTGGGTACA
781GTCAGCAGGC GAGTTTGGGG CCAACCTCAG ATGAGTTTGG CCAACAGCCT ACTGGCCCCA
841CTTCCTTTAC CAATCAGATT TACCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
901attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)