Transcript: Human XM_017005731.1

PREDICTED: Homo sapiens synaptoporin (SYNPR), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SYNPR (132204)
Length:
2363
CDS:
15..920

Additional Resources:

NCBI RefSeq record:
XM_017005731.1
NBCI Gene record:
SYNPR (132204)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017005731.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000415851 TTGCAACATGCGGTGGCTATT pLKO_005 166 CDS 100% 10.800 15.120 N SYNPR n/a
2 TRCN0000059642 CTCAGCATCGACATAGCGTTT pLKO.1 237 CDS 100% 4.050 5.670 N SYNPR n/a
3 TRCN0000420147 AGGCGACATGAGGAGATATAT pLKO_005 1098 3UTR 100% 15.000 12.000 N SYNPR n/a
4 TRCN0000428184 CTATGAGTCTCTAAGTTATTT pLKO_005 1378 3UTR 100% 15.000 12.000 N SYNPR n/a
5 TRCN0000435251 ATTCATCATAGATGGCTAATT pLKO_005 1120 3UTR 100% 13.200 9.240 N SYNPR n/a
6 TRCN0000059638 CCCAAGGAAGTATTGCTACTA pLKO.1 564 CDS 100% 4.950 3.465 N SYNPR n/a
7 TRCN0000059640 CTTTATTCTCTGGGCTGGAAA pLKO.1 680 CDS 100% 4.950 3.465 N SYNPR n/a
8 TRCN0000059641 CTATGGATCAAGCAGTGGGTA pLKO.1 815 CDS 100% 2.640 1.848 N SYNPR n/a
9 TRCN0000059639 GCAGCTATAATCAAGGTGGTT pLKO.1 781 CDS 100% 2.640 1.848 N SYNPR n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017005731.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04879 pDONR223 100% 87.2% 85.3% None (many diffs) n/a
2 ccsbBroad304_04879 pLX_304 0% 87.2% 85.3% V5 (many diffs) n/a
3 TRCN0000473588 GACTTTATTTAGCACTATAACACA pLX_317 39.6% 87.2% 85.3% V5 (many diffs) n/a
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