Construct: ORF ccsbBroadEn_04968

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004392.1_s300c1, BRDN0000394846
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PRICKLE1 (144165)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 144165 PRICKLE1 prickle planar cell polarit... NM_001144881.2 100% 100%
2 human 144165 PRICKLE1 prickle planar cell polarit... NM_001144882.2 100% 100%
3 human 144165 PRICKLE1 prickle planar cell polarit... NM_001144883.2 100% 100%
4 human 144165 PRICKLE1 prickle planar cell polarit... NM_153026.3 100% 100%
5 human 144165 PRICKLE1 prickle planar cell polarit... XM_011537946.1 100% 100%
6 human 144165 PRICKLE1 prickle planar cell polarit... XM_011537947.2 100% 100%
7 human 144165 PRICKLE1 prickle planar cell polarit... XM_017018838.1 100% 100%
8 human 144165 PRICKLE1 prickle planar cell polarit... XM_017018839.1 100% 100%
9 human 144165 PRICKLE1 prickle planar cell polarit... XM_017018840.1 100% 100%
10 mouse 106042 Prickle1 prickle planar cell polarit... NM_001033217.4 84.8% 93.1% (many diffs)
11 mouse 106042 Prickle1 prickle planar cell polarit... XM_006520264.3 84.8% 93.1% (many diffs)
12 mouse 106042 Prickle1 prickle planar cell polarit... XM_006520265.1 84.8% 93.1% (many diffs)
13 mouse 106042 Prickle1 prickle planar cell polarit... XM_006520266.3 84.8% 93.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
68
ORF end:
2561
ORF length:
2493
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACATG CCTTTGGAGA TGGAGCCCAA GATGAGCAAA CTGGCCTTTG GCTGTCAGAG
121AAGTTCCACA TCAGATGATG ACTCTGGCTG TGCATTGGAG GAGTACGCCT GGGTCCCCCC
181GGGCCTGAGA CCAGAGCAGA TCCAGCTCTA TTTTGCTTGC TTACCAGAGG AAAAAGTTCC
241TTACGTTAAC AGCCCCGGAG AGAAGCATCG GATTAAACAG CTTTTGTACC AGTTACCACC
301ACATGATAAT GAGGTACGGT ATTGCCAGTC TTTGAGTGAA GAGGAGAAAA AAGAGTTGCA
361GGTGTTCAGT GCTCAGCGGA AGAAAGAAGC ACTGGGAAGA GGAACAATTA AGCTTCTGTC
421CAGAGCAGTC ATGCATGCTG TGTGTGAGCA GTGTGGTTTG AAGATAAATG GAGGTGAAGT
481TGCAGTGTTC GCCTCCCGTG CGGGCCCTGG TGTGTGCTGG CACCCATCCT GTTTTGTCTG
541TTTCACGTGT AATGAGCTGC TGGTCGACCT CATCTATTTT TATCAGGATG GAAAAATTCA
601CTGTGGCAGG CACCATGCAG AACTGCTCAA ACCACGGTGC TCAGCATGTG ACGAGATAAT
661TTTTGCTGAT GAGTGCACAG AAGCTGAGGG TCGCCATTGG CACATGAAAC ACTTCTGCTG
721CCTTGAGTGT GAAACGGTCC TGGGAGGACA GAGGTATATC ATGAAGGACG GCCGCCCCTT
781CTGCTGTGGC TGTTTTGAGT CTCTCTATGC GGAGTACTGT GAAACCTGTG GGGAACATAT
841TGGTGTGGAC CATGCACAGA TGACCTATGA CGGGCAGCAC TGGCACGCCA CGGAAGCCTG
901CTTTTCTTGT GCCCAGTGTA AAGCCTCTTT GTTGGGATGT CCCTTCCTTC CCAAACAGGG
961TCAGATTTAC TGCTCAAAAA CGTGCAGTCT TGGTGAAGAC GTCCATGCCT CTGATTCTTC
1021CGACTCTGCA TTTCAGTCAG CTCGATCAAG AGACTCCCGA AGAAGTGTCC GAATGGGCAA
1081GAGCAGCCGG TCAGCAGATC AGTGTAGACA GTCTCTCCTC TTATCGCCTG CTCTGAACTA
1141CAAGTTTCCT GGCCTCTCAG GCAATGCTGA TGACACCCTT TCTCGAAAAT TGGATGATCT
1201GAGTCTCTCC AGACAAGGAA CAAGTTTTGC CAGTGAAGAA TTTTGGAAAG GCAGAGTAGA
1261GCAGGAAACT CCAGAAGACC CTGAAGAATG GGCTGATCAT GAAGATTATA TGACGCAGCT
1321CCTCCTCAAG TTTGGTGATA AAAGCCTCTT TCAGCCACAG CCCAATGAGA TGGATATTCG
1381AGCCAGTGAG CACTGGATAT CTGATAACAT GGTTAAAAGT AAGACCGAGT TAAAGCAAAA
1441TAACCAGAGC CTTGCAAGTA AAAAATACCA GTCTGATATG TACTGGGCAC AGTCACAAGA
1501TGGACTGGGC GATTCTGCTT ATGGCAGCCA CCCAGGCCCT GCAAGCAGTA GAAGGCTTCA
1561GGAATTGGAA CTGGACCATG GGGCTTCAGG GTATAATCAT GATGAAACAC AGTGGTATGA
1621AGATTCCCTG GAGTGTCTGT CAGACCTGAA ACCAGAGCAA AGTGTTCGGG ATTCGATGGA
1681TTCTTTGGCA TTGTCCAATA TCACAGGGGC TTCGGTGGAT GGAGAAAACA AGCCAAGGCC
1741ATCATTGTAT TCTCTGCAAA ATTTTGAGGA GATGGAAACA GAAGATTGTG AGAAGATGAG
1801CAATATGGGA ACTTTGAACT CTTCCATGCT GCACAGGAGT GCAGAGTCCT TAAAGAGTCT
1861AAGTTCAGAG TTGTGTCCAG AGAAAATCCT GCCTGAAGAG AAGCCAGTAC ATCTGCCAGT
1921GCTCAGAAGG TCCAAGTCTC AATCCAGACC CCAGCAGGTC AAGTTTTCTG ATGATGTCAT
1981TGACAATGGG AACTATGACA TTGAAATCCG GCAGCCTCCG ATGAGTGAAA GGACTCGGAG
2041ACGCGTCTAC AATTTTGAAG AGAGGGGATC CAGGTCTCAT CACCACCGCC GCCGGAGAAG
2101TAGAAAGTCC CGCTCCGACA ATGCCCTGAA TCTTGTTACA GAAAGAAAAT ACTCTCCCAA
2161GGACAGACTG CGGCTGTACA CCCCCGATAA CTATGAGAAA TTTATACAGA ATAAAAGTGC
2221CCGGGAGATC CAAGCATACA TCCAGAATGC TGATCTCTAC GGACAGTACG CCCATGCCAC
2281TTCCGATTAT GGCCTGCAGA ACCCAGGAAT GAATCGGTTT CTGGGACTCT ACGGCGAGGA
2341TGATGATTCC TGGTGTTCTT CCTCCTCCTC CTCTTCCGAC TCGGAAGAAG AAGGATATTT
2401TCTTGGACAA CCAATCCCTC AACCCCGGCC ACAGAGATTT GCCTACTATA CAGATGACCT
2461TTCTAGTCCA CCATCTGCAC TTCCCACCCC TCAGTTTGGT CAGAGGACAA CAAAATCCAA
2521GAAGAAAAAG GGACACAAGG GCAAAAATTG TATTATTTCT TTGCCAACTT TCTTGTACAA
2581AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

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