Construct: ORF ccsbBroadEn_05002

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018408.1_s300c1, BRDN0000392822
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF563 (147837)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 147837 ZNF563 zinc finger protein 563 NM_145276.3 100% 100%
2 human 147837 ZNF563 zinc finger protein 563 XM_011527698.2 93.2% 93.2% 0_1ins96
3 human 147837 ZNF563 zinc finger protein 563 XM_006722650.3 92.2% 86.3% 0_1ins50;80_81ins61
4 human 147837 ZNF563 zinc finger protein 563 XM_011527699.2 92.2% 86.3% 0_1ins50;80_81ins61
5 human 147837 ZNF563 zinc finger protein 563 XM_011527700.2 92.2% 86.3% 0_1ins50;80_81ins61
6 human 147837 ZNF563 zinc finger protein 563 XM_006722651.3 88.2% 88.2% 189_190ins168
7 human 51710 ZNF44 zinc finger protein 44 NM_016264.4 65.1% 56.4% (many diffs)
8 human 147837 ZNF563 zinc finger protein 563 XM_005259750.4 63.4% 63.4% 189_190ins522
9 human 79973 ZNF442 zinc finger protein 442 XM_006722908.3 62.3% 55.3% (many diffs)
10 human 90576 ZNF799 zinc finger protein 799 NM_001080821.3 62.1% 54.8% (many diffs)
11 human 79973 ZNF442 zinc finger protein 442 NM_030824.3 61.5% 54.6% (many diffs)
12 human 79973 ZNF442 zinc finger protein 442 XM_017027318.2 61.5% 54.6% (many diffs)
13 human 51710 ZNF44 zinc finger protein 44 XM_011528062.3 61.3% 53% (many diffs)
14 human 79973 ZNF442 zinc finger protein 442 XM_017027316.1 60.6% 53.9% (many diffs)
15 human 51710 ZNF44 zinc finger protein 44 NM_001164276.2 60.4% 52.2% (many diffs)
16 human 10224 ZNF443 zinc finger protein 443 NM_005815.5 60% 53.2% (many diffs)
17 human 79973 ZNF442 zinc finger protein 442 XM_017027317.1 59.6% 52.2% (many diffs)
18 human 90576 ZNF799 zinc finger protein 799 NM_001322497.1 58% 50.9% (many diffs)
19 human 90576 ZNF799 zinc finger protein 799 NM_001322498.1 58% 50.9% (many diffs)
20 human 79973 ZNF442 zinc finger protein 442 NM_001363774.1 57.8% 50.6% (many diffs)
21 human 51710 ZNF44 zinc finger protein 44 NM_001353552.1 50% 43.9% (many diffs)
22 human 51710 ZNF44 zinc finger protein 44 NM_001353553.1 50% 43.9% (many diffs)
23 human 147837 ZNF563 zinc finger protein 563 NM_001363608.1 48.1% 41.7% 595_596ins118;687_688ins623
24 human 51710 ZNF44 zinc finger protein 44 XR_002958321.1 12.7% (many diffs)
25 human 51710 ZNF44 zinc finger protein 44 XR_001753701.1 12.2% (many diffs)
26 human 51710 ZNF44 zinc finger protein 44 XR_001753702.1 11.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1494
ORF length:
1428
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA CGCAGTGGCC TTTGAGGATG TGGCTGTGAA CTTCACCCAG GAGGAATGGG
121CTTTGCTGGG TCCATCACAG AAGAATTTAT ACAGATATGT GATGCAAGAA ACCATCAGGA
181ACCTGGACTG TATAAGAATG ATATGGGAAG AACAGAATAC TGAAGATCAG TACAAAAATC
241CTAGGAGAAA TCTAAGATGT CATATGGTAG AGAGATTCAG TGAAAGTAAA GACAGTAGTC
301AGTGTGGAGA AACATTTAGC CTCATTCGAG ATAGTATTGT GAACAACAGC ATTTGTCCTG
361GAGAAGATCC ATGTCAAAGC GCTGAGTGTG AAGAAGTCAT AATGGGTCAT TTATCCCTTA
421ATAGCCACAT CAGAGTTGAT TCTGGACACA AACCACATGA GTATCAGGAA TATGGAGAGA
481AGCCACATAC ACATAAACAA CGTGGGAAAG CCTTCAGTTA CCATCACTCC TTTCAGTCGC
541GTGGAAGGCC TCACACTGGA AAGAAACGCT ATGAGTGTAA GGAATGTGGA AAAACCTTCA
601GTTCTCGTAG AAACCTTCGA AGACACATGG TAGTGCAAGG TGGAAATAGA CCTTATAAAT
661GTAAGTTGTG TGGGAAAGCT TTTTTTTGGC CCAGTTTATT ACGTATGCAT GAAAGAACTC
721ACACTGGAGA GAAACCGTAT GAATGTAAGC AGTGTTCTAA AGCCTTTCCT TTTTACAGTT
781CCTATCGAAG ACATGAGAGA ATGCACACTG GGGAGAAACC GTATGAATGT AAGCAGTGTT
841CTAAAGCCTT GCCTGATTCC AGTTCCTATA TAAGACATGA AAGAACTCAC ACTGGAGAGA
901AACCATATAC ATGTAAACAG TGTGGGAAAG CCTTCAGTGT TTCCAGTTCC CTTCGAAGAC
961ATGAAACCAC TCACAGTGCA GAGAAACCCT ATGAGTGTAA GCAATGCGGG AAAACATTTC
1021ATCATCTTGG AAGCTTTCAG ATACACATGA AAAGGCACAC TGGAGATCGA CCTCATAAAT
1081GTAAGATATG TGGGAAAGGC TTTGATCGTC CCAGTTTAGT TCGATATCAT GAACGAATTC
1141ACACTGGAGA GAAACCCTAT GAATGCAAGC AGTGTGGGAA AACGTTATCT CATAGCTCAA
1201GCTTTCGAAG ACACATGATA ATGCACACTG GAGGTGGACC TCATAAATGC AAGATATGTG
1261GGAAAGCTTT TGTTTATCCT AGTGTATGTC AAAGACACGA AAAGTCTCAC AGTGGAGAGA
1321AACCCTATGA ATGCAAGCAG TGTGGGAAAG CGTTATCTCA TAGCTCAAGC TTTCGAAGAC
1381ATATGGTAAT GCATACGGGA GATGGGCCGA ATAAATGCAA GGTATGTGGG AAAGCCTTTG
1441TTTATCCCAG TGTATGTCAA AGACATGAAA AGACTCACTG GAGAGAAACA ATATGCCCAA
1501CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)