Construct: ORF ccsbBroadEn_05061

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010358.1_s300c1, BRDN0000392757
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RNF38 (152006)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 152006 RNF38 ring finger protein 38 NM_194328.2 100% 100%
2 human 152006 RNF38 ring finger protein 38 NM_194330.2 100% 100%
3 human 152006 RNF38 ring finger protein 38 NM_194332.2 100% 100%
4 human 152006 RNF38 ring finger protein 38 XM_005251366.3 100% 100%
5 human 152006 RNF38 ring finger protein 38 XM_005251367.3 100% 100%
6 human 152006 RNF38 ring finger protein 38 XM_006716721.3 100% 100%
7 human 152006 RNF38 ring finger protein 38 XM_011517712.2 100% 100%
8 human 152006 RNF38 ring finger protein 38 XM_011517713.2 100% 100%
9 human 152006 RNF38 ring finger protein 38 XM_017014294.1 94.1% 84.3% (many diffs)
10 human 152006 RNF38 ring finger protein 38 NM_194329.3 92.9% 92.9% 1_99del
11 human 152006 RNF38 ring finger protein 38 XM_017014296.1 92.6% 91.8% (many diffs)
12 human 152006 RNF38 ring finger protein 38 XM_017014297.1 92.6% 91.8% (many diffs)
13 human 152006 RNF38 ring finger protein 38 NM_022781.5 83.8% 83.8% 1_249del
14 mouse 73469 Rnf38 ring finger protein 38 NM_001038993.3 93.2% 98.1% (many diffs)
15 mouse 73469 Rnf38 ring finger protein 38 XM_006538302.3 93.2% 98.1% (many diffs)
16 mouse 73469 Rnf38 ring finger protein 38 XM_006538303.3 93.2% 98.1% (many diffs)
17 mouse 73469 Rnf38 ring finger protein 38 XM_006538304.3 93.2% 98.1% (many diffs)
18 mouse 73469 Rnf38 ring finger protein 38 XM_006538305.3 93.2% 98.1% (many diffs)
19 mouse 73469 Rnf38 ring finger protein 38 XM_006538306.3 93.2% 98.1% (many diffs)
20 mouse 73469 Rnf38 ring finger protein 38 XM_011250115.2 93.2% 98.1% (many diffs)
21 mouse 73469 Rnf38 ring finger protein 38 XM_011250116.2 93.2% 98.1% (many diffs)
22 mouse 73469 Rnf38 ring finger protein 38 XM_011250117.2 93.2% 98.1% (many diffs)
23 mouse 73469 Rnf38 ring finger protein 38 XM_011250118.2 93.2% 98.1% (many diffs)
24 mouse 73469 Rnf38 ring finger protein 38 XM_011250119.2 93.2% 98.1% (many diffs)
25 mouse 73469 Rnf38 ring finger protein 38 XM_011250120.2 93.2% 98.1% (many diffs)
26 mouse 73469 Rnf38 ring finger protein 38 NM_175201.5 86.8% 91.3% (many diffs)
27 mouse 73469 Rnf38 ring finger protein 38 XM_006538301.3 83.9% 88.3% (many diffs)
28 mouse 73469 Rnf38 ring finger protein 38 XM_006538300.3 83% 87.4% (many diffs)
29 mouse 73469 Rnf38 ring finger protein 38 XM_006538299.3 78.4% 82.4% (many diffs)
30 mouse 73469 Rnf38 ring finger protein 38 XM_006538298.3 69.8% 73.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1362
ORF length:
1296
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCG ACCATGGGAG ATGACATCAA ATAGGCAGCC CCCTTCAGTT CGACCAAGCC
121AACATCACTT CTCAGGGGAA CGATGCAACA CACCTGCACG CAACAGAAGA AGTCCTCCTG
181TCAGGCGCCA GAGAGGAAGA AGGGATCGTC TGTCTCGACA TAATTCCATT AGTCAAGATG
241AAAACTATCA CCATCTCCCT TACGCACAGC AGCAAGCAAT AGAGGAGCCT CGAGCCTTCC
301ACCCTCCGAA TGTATCTCCC CGTCTGCTAC ATCCTGCTGC TCATCCACCC CAGCAGAATG
361CAGTCATGGT TGACATACAT GATCAGCTCC ATCAAGGAAC AGTCCCTGTT TCTTACACAG
421TAACAACAGT GGCACCACAT GGGATTCCAC TCTGCACAGG CCAGCACATC CCTGCTTGTA
481GTACACAGCA GGTCCCAGGA TGCTCTGTGG TTTTCAGTGG ACAGCACCTC CCTGTCTGTA
541GTGTGCCTCC TCCAATGCTT CAGGCATGTT CAGTTCAGCA CTTACCAGTA CCATATGCTG
601CATTCCCACC CCTTATTTCT AGTGATCCAT TTCTTATACA TCCTCCTCAC CTTTCTCCCC
661ATCATCCTCC TCATTTGCCA CCACCAGGCC AGTTTGTCCC TTTCCAAACA CAGCAATCAC
721GATCGCCTCT GCAAAGGATA GAAAATGAAG TGGAACTCTT AGGAGAACAT CTTCCAGTAG
781GAGGTTTTAC TTACCCTCCA TCAGCCCACC CCCCAACATT ACCTCCATCA GCTCCCTTGC
841AGTTCTTAAC ACATGATCCT TTGCATCAGG AGGTGTCCTT TGGAGTACCT TATCCTCCAT
901TTATGCCTCG GAGGCTTACA GGACGTAGTA GATACCGATC CCAGCAGCCA ATACCACCTC
961CCCCTTATCA TCCCAGCTTA CTGCCATATG TGTTATCAAT GCTTCCAGTG CCACCTGCAG
1021TGGGCCCAAC TTTCAGCTTT GAATTAGATG TAGAAGATGG AGAAGTAGAA AATTACGAGG
1081CCCTGTTAAA CCTGGCAGAG CGACTGGGAG AGGCAAAGCC TCGTGGACTG ACTAAAGCAG
1141ATATTGAACA ACTTCCTTCT TATCGGTTCA ATCCTAACAA CCACCAGTCA GAACAGACTT
1201TGTGTGTAGT ATGCATGTGT GATTTTGAGT CAAGGCAGCT ACTTAGAGTC TTACCCTGTA
1261ACCACGAGTT CCATGCCAAG TGTGTTGACA AATGGCTTAA GGCAAATCGT ACTTGCCCAA
1321TTTGCCGAGC TGATGCTTCA GAAGTGCATC GGGATTCAGA ATGCCCAACT TTCTTGTACA
1381AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)