Construct: ORF ccsbBroadEn_05159
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006406.1_s300c1, BRDN0000394436
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ADAMTS15 (170689)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 170689 | ADAMTS15 | ADAM metallopeptidase with ... | NM_139055.3 | 100% | 100% | |
| 2 | human | 170689 | ADAMTS15 | ADAM metallopeptidase with ... | XM_005271419.4 | 65.1% | 65.1% | 0_1ins993 |
| 3 | human | 170689 | ADAMTS15 | ADAM metallopeptidase with ... | XR_001747783.1 | 46.7% | 1_98del;2949_6090del | |
| 4 | mouse | 235130 | Adamts15 | a disintegrin-like and meta... | NM_001024139.1 | 87.9% | 93% | (many diffs) |
| 5 | mouse | 235130 | Adamts15 | a disintegrin-like and meta... | NM_001329420.1 | 57.1% | 61.2% | (many diffs) |
| 6 | mouse | 235130 | Adamts15 | a disintegrin-like and meta... | XM_006510213.1 | 57.1% | 61.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2919
- ORF length:
- 2850
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCTTCTGCTG GGCATCCTAA CCCTGGCTTT CGCCGGGCGA ACCGCTGGAG 121 GCTCTGAGCC AGAGCGGGAG GTAGTCGTTC CCATCCGACT GGACCCGGAC ATTAACGGCC 181 GCCGCTACTA CTGGCGGGGT CCCGAGGACT CCGGGGATCA GGGACTCATT TTTCAGATCA 241 CAGCATTTCA GGAGGACTTT TACCTACACC TGACGCCGGA TGCTCAGTTC TTGGCTCCCG 301 CCTTCTCCAC TGAGCATCTG GGCGTCCCCC TCCAGGGGCT CACCGGGGGC TCTTCAGACC 361 TGCGACGCTG CTTCTATTCT GGGGACGTGA ACGCCGAGCC GGACTCGTTC GCTGCTGTGA 421 GCCTGTGCGG GGGGCTCCGC GGAGCCTTTG GCTACCGAGG CGCCGAGTAT GTCATTAGCC 481 CGCTGCCCAA TGCTAGCGCG CCGGCGGCGC AGCGCAACAG CCAGGGCGCA CACCTTCTCC 541 AGCGCCGGGG TGTTCCGGGC GGGCCTTCCG GAGACCCCAC CTCTCGCTGC GGGGTGGCCT 601 CGGGCTGGAA CCCCGCCATC CTACGGGCCC TGGACCCTTA CAAGCCGCGG CGGGCGGGCT 661 TCGGGGAGAG TCGTAGCCGG CGCAGGTCTG GGCGCGCCAA GCGTTTCGTG TCTATCCCGC 721 GGTACGTGGA GACGCTGGTG GTCGCGGACG AGTCAATGGT CAAGTTCCAC GGCGCGGACC 781 TGGAACATTA TCTGCTGACG CTGCTGGCAA CGGCGGCGCG ACTCTACCGC CATCCCAGCA 841 TCCTCAACCC CATCAACATC GTTGTGGTCA AGGTGCTGCT TCTTAGAGAT CGTGACTCCG 901 GGCCCAAGGT CACCGGCAAT GCGGCCCTGA CGCTGCGCAA CTTCTGTGCC TGGCAGAAGA 961 AGCTGAACAA AGTGAGTGAC AAGCACCCCG AGTACTGGGA CACTGCCATC CTCTTCACCA 1021 GGCAGGACCT GTGTGGAGCC ACCACCTGTG ACACCCTGGG CATGGCTGAT GTGGGTACCA 1081 TGTGTGACCC CAAGAGAAGC TGCTCTGTCA TTGAGGACGA TGGGCTTCCA TCAGCCTTCA 1141 CCACTGCCCA CGAGCTGGGC CACGTGTTCA ACATGCCCCA TGACAATGTG AAAGTCTGTG 1201 AGGAGGTGTT TGGGAAGCTC CGAGCCAACC ACATGATGTC CCCGACCCTC ATCCAGATCG 1261 ACCGTGCCAA CCCCTGGTCA GCCTGCAGTG CTGCCATCAT CACCGACTTC CTGGACAGCG 1321 GGCACGGTGA CTGCCTCCTG GACCAACCCA GCAAGCCCAT CTCCCTGCCC GAGGATCTGC 1381 CGGGCGCCAG CTACACCCTG AGCCAGCAGT GCGAGCTGGC TTTTGGCGTG GGCTCCAAGC 1441 CCTGTCCTTA CATGCAGTAC TGCACCAAGC TGTGGTGCAC CGGGAAGGCC AAGGGACAGA 1501 TGGTGTGCCA GACCCGCCAC TTCCCCTGGG CCGATGGCAC CAGCTGTGGC GAGGGCAAGC 1561 TCTGCCTCAA AGGGGCCTGC GTGGAGAGAC ACAACCTCAA CAAGCACAGG GTGGATGGTT 1621 CCTGGGCCAA ATGGGATCCC TATGGCCCCT GCTCGCGCAC ATGTGGTGGG GGCGTGCAGC 1681 TGGCCAGGAG GCAGTGCACC AACCCCACCC CTGCCAACGG GGGCAAGTAC TGCGAGGGAG 1741 TGAGGGTGAA ATACCGATCC TGCAATCTGG AGCCCTGCCC CAGCTCAGCC TCCGGAAAGA 1801 GCTTCCGGGA GGAGCAGTGT GAGGCTTTCA ACGGCTACAA CCACAGCACC AACCGGCTCA 1861 CTCTCGCCGT GGCATGGGTG CCCAAGTACT CCGGCGTGTC TCCCCGGGAC AAGTGCAAGC 1921 TCATCTGCCG AGCCAATGGC ACTGGCTACT TCTATGTGCT GGCACCCAAG GTGGTGGACG 1981 GCACGCTGTG CTCTCCTGAC TCCACCTCCG TCTGTGTCCA AGGCAAGTGC ATCAAGGCTG 2041 GCTGTGATGG GAACCTGGGC TCCAAGAAGA GATTCGACAA GTGTGGGGTG TGTGGGGGAG 2101 ACAATAAGAG CTGCAAGAAG GTGACTGGAC TCTTCACCAA GCCCATGCAT GGCTACAATT 2161 TCGTGGTGGC CATCCCCGCA GGCGCCTCAA GCATCGACAT CCGCCAGCGC GGTTACAAAG 2221 GGCTGATCGG GGATGACAAC TACCTGGCTC TGAAGAACAG CCAAGGCAAG TACCTGCTCA 2281 ACGGGCATTT CGTGGTGTCG GCGGTGGAGC GGGACCTGGT GGTGAAGGGC AGTCTGCTGC 2341 GGTACAGCGG CACGGGCACA GCGGTGGAGA GCCTGCAGGC TTCCCGGCCC ATCCTGGAGC 2401 CGCTGACCGT GGAGGTCCTC TCCGTGGGGA AGATGACACC GCCCCGGGTC CGCTACTCCT 2461 TCTATCTGCC CAAAGAGCCT CGGGAGGACA AGTCCTCTCA TCCCAAGGAC CCCCGGGGAC 2521 CCTCTGTCTT GCACAACAGC GTCCTCAGCC TCTCCAACCA GGTGGAGCAG CCGGACGACA 2581 GGCCCCCTGC ACGCTGGGTG GCTGGCAGCT GGGGGCCGTG CTCCGCGAGC TGCGGCAGTG 2641 GCCTGCAGAA GCGGGCGGTG GACTGCCGGG GCTCCGCCGG GCAGCGCACG GTCCCTGCCT 2701 GTGATGCAGC CCATCGGCCC GTGGAGACAC AAGCCTGCGG GGAGCCCTGC CCCACCTGGG 2761 AGCTCAGCGC CTGGTCACCC TGCTCCAAGA GCTGCGGCCG GGGATTTCAG AGGCGCTCAC 2821 TCAAGTGTGT GGGCCACGGA GGCCGGCTGC TGGCCCGGGA CCAGTGCAAC TTGCACCGCA 2881 AGCCCCAGGA GCTGGACTTC TGCGTCCTGA GGCCGTGCTT GCCAACTTTC TTGTACAAAG 2941 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac