Construct: ORF ccsbBroadEn_05246

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007327.1_s300c1, BRDN0000389977
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FAM13C (220965)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 220965 FAM13C family with sequence simila... NM_001001971.2 100% 100%
2 human 220965 FAM13C family with sequence simila... XM_005269619.4 99.7% 99.7% 1038_1039insCAG
3 human 220965 FAM13C family with sequence simila... NM_198215.4 83.2% 83.2% 942_1235del
4 human 220965 FAM13C family with sequence simila... XM_005269618.4 83% 83% 942_1235del;1332_1333insCAG
5 human 220965 FAM13C family with sequence simila... XM_017015891.1 82.9% 82.9% 0_1ins249
6 human 220965 FAM13C family with sequence simila... NM_001347845.1 82.7% 82.7% 0_1ins249;789_790insCAG
7 human 220965 FAM13C family with sequence simila... NM_001347843.1 79.8% 78.4% (many diffs)
8 human 220965 FAM13C family with sequence simila... XM_024447879.1 79.8% 78.4% (many diffs)
9 human 220965 FAM13C family with sequence simila... NM_001347852.1 77.9% 76.1% (many diffs)
10 human 220965 FAM13C family with sequence simila... NM_001347849.1 77.8% 76% (many diffs)
11 human 220965 FAM13C family with sequence simila... NM_001143773.1 69% 69% 0_1ins249;693_986del
12 human 220965 FAM13C family with sequence simila... NM_001347840.1 69% 69% 0_1ins249;693_986del
13 human 220965 FAM13C family with sequence simila... NM_001347847.1 69% 69% 0_1ins249;693_986del
14 human 220965 FAM13C family with sequence simila... XM_006717702.3 69% 69% 0_1ins249;693_986del
15 human 220965 FAM13C family with sequence simila... NM_001166698.1 68.8% 68.8% 0_1ins249;693_986del;1083_1084insCAG
16 human 220965 FAM13C family with sequence simila... NM_001347842.1 68.8% 68.8% 0_1ins249;693_986del;1083_1084insCAG
17 human 220965 FAM13C family with sequence simila... NM_001347844.1 68.8% 68.8% 0_1ins249;693_986del;1083_1084insCAG
18 human 220965 FAM13C family with sequence simila... XM_017015886.1 68.8% 68.8% 0_1ins249;693_986del;1083_1084insCAG
19 human 220965 FAM13C family with sequence simila... XM_017015889.1 68.8% 68.8% 0_1ins249;693_986del;1083_1084insCAG
20 human 220965 FAM13C family with sequence simila... XM_011539490.2 66.5% 65.2% (many diffs)
21 human 220965 FAM13C family with sequence simila... XM_011539491.2 66.5% 65.2% (many diffs)
22 human 220965 FAM13C family with sequence simila... NM_001347848.1 66.3% 65.1% (many diffs)
23 human 220965 FAM13C family with sequence simila... NM_001347850.1 66.3% 65.1% (many diffs)
24 human 220965 FAM13C family with sequence simila... NM_001347846.1 64% 62.1% (many diffs)
25 human 220965 FAM13C family with sequence simila... NM_001347851.1 64% 62.1% (many diffs)
26 human 220965 FAM13C family with sequence simila... XM_024447880.1 37.7% 37.7% 0_1ins798;144_437del
27 human 220965 FAM13C family with sequence simila... XM_024447881.1 37.6% 37.6% 0_1ins798;144_437del;534_535insCAG
28 mouse 71721 Fam13c family with sequence simila... NM_024244.4 68.5% 67.9% (many diffs)
29 mouse 71721 Fam13c family with sequence simila... NM_001143776.1 68.3% 67.8% (many diffs)
30 mouse 71721 Fam13c family with sequence simila... NM_001143777.1 57.6% 58.5% (many diffs)
31 mouse 71721 Fam13c family with sequence simila... XM_017314101.1 57.6% 58.5% (many diffs)
32 mouse 71721 Fam13c family with sequence simila... XM_017314102.1 57.4% 58.3% (many diffs)
33 mouse 71721 Fam13c family with sequence simila... XM_006514150.2 42.5% 44.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1527
ORF length:
1461
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTT TTCTTGTTTC TGTTTCAGCC TTCAGGATAA TTCCTTCAGC AGCACCACTG
121TAACAGAGTG TGACGAAGAT CCAGTCTCTC TACATGAAGA CCAGACTGAT TGCTCCAGTC
181TCAGAGATGA AAACAATAAA GAGAACTACC CCGACGCAGG GGCTCTGGTA GAAGAGCACG
241CGCCGCCCTC TTGGGAGCCG CAGCAGCAGA ATGTAGAGGC GACCGTGCTG GTGGACAGCG
301TATTGCGACC CAGCATGGGC AACTTCAAGT CCAGGAAGCC CAAGTCCATC TTCAAAGCGG
361AGAGCGGGAG GAGCCACGGA GAAAGTCAGG AGACAGAGCA TGTGGTATCC AGCCAGTCAG
421AGTGTCAGGT GAGAGCAGGA ACACCAGCTC ATGAGAGTCC ACAAAACAAT GCCTTCAAGT
481GCCAAGAAAC AGTGCGACTT CAACCAAGAA TAGACCAGAG GACTGCCATT TCGCCAAAGG
541ATGCTTTTGA AACTCGGCAG GACTTAAATG AGGAAGAAGC TGCTCAGGTG CATGGAGTCA
601AGGACCCGGC GCCAGCATCA ACCCAGAGCG TGCTTGCCGA TGGGACAGAT TCTGCAGACC
661CCTCACCAGT CCACAAAGAT GGGCAGAATG AGGCCGACAG TGCACCAGAA GACCTCCACT
721CTGTGGGGAC CAGCAGGCTG CTCTATCACA TCACTGATGG TGATAACCCA CTGCTGTCGC
781CACGATGCTC CATCTTCAGC CAAAGCCAGA GATTCAACTT AGACCCCGAG TCAGCCCCAT
841CTCCACCCAG CACTCAGCAG TTTATGATGC CGCGGAGTTC TTCACGCTGC AGCTGTGGAG
901ATGGCAAGGA GCCACAGACC ATCACCCAGC TCACCAAGCA CATCCAGAGC CTCAAGCGGA
961AAATTCGGAA ATTTGAAGAA AAATTTGAAC AAGAAAAGAA ATACCGGGTA ACTAAGCAAG
1021ACAAGAACCT CATAAAGCCG CTTTATGACC GATACAGAAT TATCAAGCAA ATCTTGTCAA
1081CACCTTCCCT TATTCCAACA ATTCAGGAGG AAGAGGACTC TGATGAAGAC CGTCCACAGG
1141GAAGCCAACA ACCTTCTTTG GCAGATCCAG CATCTCACCT TCCTGTTGGT GACCACCTCA
1201CCTACTCTAA TGAGACTGAG CCTGTTAGGG CCCTTTTACC AGATGAAAAG AAAGAAGTAA
1261AACCACCAGC TCTCTCCATG TCTAATTTAC ATGAGGCTAC CATGCCTGTA CTTCTTGACC
1321ATCTCCGAGA AACTAGGGCT GACAAGAAGA GACTGCGGAA AGCCTTAAGA GAATTTGAAG
1381AACAGTTTTT TAAACAAACA GGAAGAAGTC CACAAAAGGA AGATAGGATA CCAATGGCAG
1441ATGAGTATTA TGAATATAAG CACATAAAAG CCAAACTGAG ACTATTAGAG GTCCTCATCA
1501GCAAGCAAGA TGTGGCCAAA ACTATTTGCC CAACTTTCTT GTACAAAGTt ggcattataa
1561gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)