Transcript: Human XM_011539491.2

PREDICTED: Homo sapiens family with sequence similarity 13 member C (FAM13C), transcript variant X6, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
FAM13C (220965)
Length:
3675
CDS:
513..1994

Additional Resources:

NCBI RefSeq record:
XM_011539491.2
NBCI Gene record:
FAM13C (220965)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011539491.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000417367 GAGGATTCTAAGGTAACTAAG pLKO_005 1461 CDS 100% 10.800 15.120 N FAM13C n/a
2 TRCN0000425140 GATTTGGCTAAAGGTCGTAAA pLKO_005 1230 CDS 100% 10.800 15.120 N FAM13C n/a
3 TRCN0000420634 TCTTGACCATCTCCGAGAAAC pLKO_005 1778 CDS 100% 10.800 15.120 N FAM13C n/a
4 TRCN0000179084 CGCTTTATGACCGATACAGAA pLKO.1 1504 CDS 100% 4.950 6.930 N FAM13C n/a
5 TRCN0000423172 ATACAACAGGTAGCCATATAA pLKO_005 2182 3UTR 100% 15.000 12.000 N FAM13C n/a
6 TRCN0000415926 GCTAGCAAGAAAGCAATTTAT pLKO_005 2436 3UTR 100% 15.000 10.500 N FAM13C n/a
7 TRCN0000146803 CATGGTGACAAGACTTCTAAT pLKO.1 1185 CDS 100% 13.200 9.240 N FAM13C n/a
8 TRCN0000146804 CCTTCCCTTATTCCAACAATT pLKO.1 1548 CDS 100% 13.200 9.240 N FAM13C n/a
9 TRCN0000217691 GTGCGACTTCAACCAAGAATA pLKO.1 663 CDS 100% 13.200 9.240 N Fam13c n/a
10 TRCN0000128990 GAACCTCATAAAGCCGCTTTA pLKO.1 1490 CDS 100% 10.800 7.560 N FAM13C n/a
11 TRCN0000130859 GAAGCCCAAGTCCATCTTCAA pLKO.1 417 5UTR 100% 4.950 3.465 N FAM13C n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011539491.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09861 pDONR223 100% 83.5% 82.2% None (many diffs) n/a
2 ccsbBroad304_09861 pLX_304 0% 83.5% 82.2% V5 (many diffs) n/a
3 TRCN0000480797 ATTGTAGACACCCAGCCTCTTCTG pLX_317 23.4% 83.5% 82.2% V5 (many diffs) n/a
4 ccsbBroadEn_05246 pDONR223 100% 66.5% 65.2% None (many diffs) n/a
5 ccsbBroad304_05246 pLX_304 0% 66.5% 65.2% V5 (many diffs) n/a
6 TRCN0000478166 GTGCACATTTGCTGCCGACCAACA pLX_317 14.4% 66.5% 65.2% V5 (many diffs) n/a
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