Construct: ORF ccsbBroadEn_05500

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015863.1_s300c1, BRDN0000457395
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ECT2L (345930)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 345930 ECT2L epithelial cell transformin... NM_001077706.2 100% 100%
2 human 345930 ECT2L epithelial cell transformin... NM_001195037.2 100% 100%
3 human 345930 ECT2L epithelial cell transformin... XM_006715472.3 95.5% 95.5% 1579_1704del
4 human 345930 ECT2L epithelial cell transformin... XM_011535795.2 95.5% 95.5% 1579_1704del
5 human 345930 ECT2L epithelial cell transformin... XM_017010828.1 95.5% 95.5% 1579_1704del
6 human 345930 ECT2L epithelial cell transformin... XM_017010829.1 92.2% 92.1% 1198_1199ins93;1486_1611del
7 human 345930 ECT2L epithelial cell transformin... XM_011535797.2 88.2% 88.2% 0_1ins207;1372_1497del
8 human 345930 ECT2L epithelial cell transformin... XM_017010830.1 59.1% 58.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2781
ORF length:
2712
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGAGAGCTTC CACACCAGAT TTAGTGCCTG GACACCTTTT AGCAACAAGT
121CATTAAATAG ACAGCTCTTT CAGGAAAGAG TGGCTCTTAT AAGTCATTGG TTTGACCTCT
181GGACTAACAA GCAACGTCAA GAATTCTTAT TCGCAATTTT TTTAAGATGC ACTAAATCAC
241AATTAAGGTT TGTCCAAGAC TGGTTTTCAG AAAGGATGCA AGTGGCCAAA GTGGACTTCT
301CTACAGTGTT ACCACGCTTC ATTTCTCTAT ATATCTTTTC CTTTTTGAGT CCGAAAGATT
361TGTGTGCCGC TGCCCAAGTC AGCTGGCCCT GGAAGTTTTT AACTGAACAG GATTGCTTAT
421GGATGCCCAA ATGCGTTAAG TTCGGATGGT TTCTGCCCTA TACTCCAACA GATAATGAGT
481ATGGTGCTTG GAAGCGCCAT TACATTGCTT GTGTGTCCCA CTTAGACTGG CTGACACCTA
541GGGAGGCTGC TGCTACTTAT GGGACGCTGA ATGAACCCAA AACAGAAGAT GAGGAACTAC
601TGGAGAGACA AAGAGAAAAG TGCCTGAGGA AAAGAATTTG GGAGAAAATT GCACTACGTA
661AGAAGGAGTT ATTCAAAGTT CGACCCCCTT GGGTGAGTGG AACTTGCTGC TCTAGCGTGC
721TAAAGCCCAG ATGCCAACCA CGCCTCTCCC AGACTGTAAG GGAGCGAGTG GGATTACATG
781AAGCTTTGGA GAAACAGCTT GTTTTGACAT CGTTAGAAAC CTTGCCCAAG CGAAGCAATA
841TTTCTGGAAG CCATTCCTAC CCTTTATTAT CAAAGAAAAA TTGGCATGGA GTTCATAAAA
901ATGATGACAG ATCTTCATAT GCTCTCCGGC CACACTTCAT GTTAATATCA TCCCGGATTC
961CTGCGTATGA GATGGTGATG GAGAGTGTGA AGGCTGGTGT TGTTTCTGTG GTATATGAAC
1021ACAGCGTAAC CTTGGAAAGC CTTCTGTATC TTATAGAAAA AGCTCTGGAT GGGCAGAAGG
1081CACAGAGCAT CGGAATATTT AGCGATGGAG ACAGCAGAGA AATCAATTTA CTCCAAGGCT
1141ATAAAATTGG TGTTAAAAAT TTACTGAGGC CTGAAGTGAG AGATTTCTGG GAGAAATTAG
1201GAAGCTATGT GGCCACTGAA GAAGAAGGGG GTCACGTGGA CTTCTTCGTG CCCCTTGGAG
1261CATCAGAGGC AGGAATTGAA GTTCTTTCCC AGCTGTCTCA ACTAACTGGC ACGTTCTTTA
1321CGGCCCCCAC TGGGATTGCA ACTGGCTCTT ACCAGCACAT TCTTAGTGAT TGGCTGGGAT
1381CCCAATGGGG AAAGGCCCCC TCTTCCATCT ACTTCTGCGA ATCGAAGCTA CAGACGTGGT
1441CCAGCTTCAC AGACTTCCTA GAAGAAACCT TGAAAACAGT AAGGAAGCAG CTGTATCCTT
1501TCTTCAAGGA ACTGCAGAAG AGCATCAGTG GCAGGATGAT AGGGCAGTTT ATGTTTGACA
1561CCATGGGTAT GACCAACATT CTAAACAACC AAGATACTGC GCAAGCTCTG GCAGATGGAT
1621TGATGGAGTT GTCAAAAGAA GATTCTGAAA GAAATGTTGT AGAAGACAAT TCTTGGGACA
1681CAAAGTCCAG GCTCAGCAAA AATGATTTAA ATTTTGAAGC ACTGATTAAT CTGGAGAGAA
1741TACTCCAGAA GGACTCAGCA GAAAAGCGAG CTAGAGTTGT CAGAGAACTC TTACAGAGTG
1801AGAGAAAATA CGTGCAGATA CTGGAAATTG TGAGAGATGT TTATGTCGCA CCACTGAAAG
1861CAGCATTGTC ATCAAACAGA GCGATTCTGA GTGCTGCCAA TATCCAGATC ATTTTCTGTG
1921ACATTCTACA GATTTTAAGT CTCAACAGGC AGTTTCTAGA TAACCTGAGA GACAGACTGC
1981AGGAATGGGG CCCAGCTCAC TGTGTGGGAG AAATAGTCAC GAAGTTTGGA AGCCAGTTAA
2041ACACATATAC CAATTTCTTC AACAATTACC CTGTCATTCT GAAAACTATT GAGAAGTGCA
2101GAGAAATGAT ACCAGCATTC CGAACTTTCC TGAAGAGGCA TGATAAGACC ATTGTTACCA
2161AAATGCTGAG CCTGCCAGAG CTGCTGCTGT ACCCATCCCG AAGATTTGAA GAATACCTTA
2221ATCTTCTCTA CGCTGTCAGG CTTCATACCC CTGCAGAGCA TGTTGACCGT GGGGACTTGA
2281CCACTGCAAT TGACCAAATC AAAAAATATA AAGGTTATAT AGATCAGATG AAGCAAAACA
2341TCACTATGAA GGATCATCTG TCAGATATAC AGAGAATCAT CTGGGGATGC CCTACTCTAT
2401CAGAAGTAAA CAGATATCTG ATTAGGGTAC AAGATGTAGC CCAACTTCAT TGCTGTGATG
2461AAGAAATAAG TTTCTCTTTA AGGCTCTATG AACACATCCA TGATCTCAGC CTTTTCCTCT
2521TCAATGATGC CCTGCTCGTT TCTAGTCGGG GCACATCTCA CACTCCATTT GAGAGGACTT
2581CAAAAACAAC CTACCAGTTC ATTGCATCAG TGGCCCTTCA TCGGTTACTC ATAGAAAATA
2641TTCCAGATTC CAAGTATGTC AAGAATGCAT TTATTCTTCA GGGTCCAAAA TATAAATGGA
2701TTTGTGCTAC AGAAATAGAG GATGATAAGT TCCTATGGCT GTCAGTACTT CGAAATGCAA
2761TCAAAAGCAG TATGGAGAAG TTGCCAACTT TCTTGTACAA AGTTGGcatt ataagaaagc
2821attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)