Construct: ORF ccsbBroadEn_05655

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006975.1_s300c1, BRDN0000390279
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DENND10 (404636)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 404636 DENND10 DENN domain containing 10 NM_207009.4 99.9% 100% 942G>A
2 human 404636 DENND10 DENN domain containing 10 NM_001303111.2 94.7% 94.7% (many diffs)
3 human 404636 DENND10 DENN domain containing 10 XM_017016261.1 94.7% 94.7% (many diffs)
4 human 404636 DENND10 DENN domain containing 10 XM_017016262.2 94.7% 94.7% (many diffs)
5 human 404636 DENND10 DENN domain containing 10 XM_017016263.1 94.7% 94.7% (many diffs)
6 human 404636 DENND10 DENN domain containing 10 XM_017016264.2 84.5% 83.7% 899_900insTATTGCTCTAAAAACAAG;903_904insAT;906_907ins145
7 human 404636 DENND10 DENN domain containing 10 NM_001303112.2 79.4% 77.3% 0_1ins151;32_33ins68;723G>A
8 human 404636 DENND10 DENN domain containing 10 XM_006717849.4 68.8% 68.9% 0_1ins333;609G>A
9 human 404636 DENND10 DENN domain containing 10 XM_006717850.3 68.8% 68.9% 0_1ins333;609G>A
10 human 404636 DENND10 DENN domain containing 10 XM_006717851.3 68.8% 68.9% 0_1ins333;609G>A
11 human 404636 DENND10 DENN domain containing 10 XM_006717852.3 68.8% 68.9% 0_1ins333;609G>A
12 human 404636 DENND10 DENN domain containing 10 XM_017016265.1 68.8% 68.9% 0_1ins333;609G>A
13 human 404636 DENND10 DENN domain containing 10 XM_017016266.2 68.8% 68.9% 0_1ins333;609G>A
14 human 404636 DENND10 DENN domain containing 10 XM_017016267.1 68.8% 68.9% 0_1ins333;609G>A
15 human 404636 DENND10 DENN domain containing 10 NM_001303113.2 57.6% 55.4% 0_1ins304;26_27ins149;489G>A
16 human 55855 DENND10P1 DENND10 pseudogene 1 NR_027141.2 42.5% (many diffs)
17 human 404636 DENND10 DENN domain containing 10 NR_130122.2 39.2% (many diffs)
18 mouse 67894 Fam45a family with sequence simila... NM_026437.3 88.6% 90.4% (many diffs)
19 mouse 67894 Fam45a family with sequence simila... NM_001167829.1 87% 88.7% (many diffs)
20 mouse 67894 Fam45a family with sequence simila... XM_006527309.3 82.4% 80.8% (many diffs)
21 mouse 67894 Fam45a family with sequence simila... NM_001347464.1 58.3% 59.9% (many diffs)
22 mouse 67894 Fam45a family with sequence simila... XM_006527311.2 58.3% 59.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1137
ORF length:
1071
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TGCGGCCGAG GTGGCGGACA CTCAGCTGAT GCTTGGAGTC GGGCTGATCG
121AAAAGGACAC AAATGGAGAA GTTCTGTGGG TGTGGTGTTA TCCTTCCACG ACAGCCACAT
181TAAGGAACCT GCTGCTGAGA AAATGCTGCC TTACAGATGA AAACAAACTT CTCCATCCCT
241TTGTCTTTGG TCAGTACAGA AGAACATGGT TTTATATCAC AACAATTGAA GTTCCAGATT
301CTTCCATTTT GAAAAAGGTG ACTCATTTTT CTATTGTCCT GACCGCCAAA GATTTTAACC
361CAGAGAAGTA TGCTGCCTTC ACTAGGATAT TGTGTAGAAT GTACCTGAAA CATGGGAGCC
421CAGTTAAAAT GATGGAGAGT TATATTGCAG TTCTCACAAA GGGGATATGC CAGAGTGAAG
481AAAACGGCTC TTTCCTTAGT AAGGATTTTG ATGCCCGAAA GGCCTACCTG GCTGGCTCCA
541TCAAAGACAT TGTATCTCAG TTTGGAATGG AAACTGTTAT CTTACACACA GCACTGATGC
601TAAAGAAAAG AATTGTGGTG TATCACCCCA AGATAGAAGC GGTCCAGGAG TTCACCAGGA
661CTCTGCCTGC CCTGGTGTGG CACCGACAGG ACTGGACCAT CCTTCACTCT TACGTGCACC
721TCAACGCCGA TGAGCTGGAA GCCCTGCAGA TGTGCACAGG TTACGTCGCT GGATTTGTAG
781ACTTGGAGGT GAGCAACAGA CCAGACCTCT ATGATGTGTT TGTGAATCTG GCAGAGAGTG
841AGATTACCAT TGCTCCCCTT GCAAAAGAGG CCATGGCAAT GGGCAAACTG CACAAAGAAA
901TGGGTCAGCT AATTGTTCAG TCTGCAGAAG ATCCAGAGAA ATCAGAGAGC CACGTTATAC
961AGGATATTGC TCTAAAAACA AGAGAAATCT TTACCAACCT AGCACCATTT TCAGAAGTTT
1021CGGCTGATGG AGAAAAGAGA GTCCTTAATT TGGAGGCGCT AAAGCAAAAA CGATTTCCAC
1081CAGCAACAGA AAACTTCCTT TATCATCTAG CAGCAGCCGA ACAAATGCTG AAAATCTGCC
1141CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg
1201aac

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