Construct: ORF ccsbBroadEn_06502

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004133.1_s300c1, BRDN0000388448
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
KPNA3 (3839)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3839 KPNA3 karyopherin subunit alpha 3 NM_002267.4 99.6% 99.2% (many diffs)
2 human 3839 KPNA3 karyopherin subunit alpha 3 XM_017020561.1 95% 94.6% (many diffs)
3 mouse 16648 Kpna3 karyopherin (importin) alpha 3 NM_008466.5 93.2% 98.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1629
ORF length:
1563
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CGAGAACCCC AGCTTGGAGA ACCACCGCAT CAAGAGCTTC AAGAACAAGG
121GCCGCGATGT GGAAACAATG CGAAGACATA GAAATGAAGT GACAGTGGAA CTGCGGAAGA
181ACAAAAGAGA TGAACACTTA TTGAAAAAGA GAAATGTTCC CCAAGAAGAA AGTCTAGAAG
241ATTCAGATGT TGATGCTGAT TTTAAAGCAC AAAATGTAAC CCTAGAAGCT ATATTGCAGA
301ATGCCACAAG TGATAACCCA GTGGTCCAAT TGAGTGCTGT CCAGGCAGCA AGAAAACTGT
361TATCCAGTGA CAGAAATCCA CCGATTGATG ACTTAATAAA ATCTGGGATT TTACCAATTC
421TAGTCAAATG TCTAGAAAGG GATGATAATC CTTCATTACA GTTTGAAGCT GCTTGGGCAT
481TAACTAACAT AGCATCAGGA ACTTCTGCAC AGACTCAAGA TATTGTGCAG TCTAATGCAG
541TACCTCTTTT TCTGAGACTT CTTCGTTCAC CACATCAGAA TGTTTGTGAA CAAGCAGTAT
601GGGCTTTGGG AAACATTATA GGTGATGGTC CTCAATGTAG AGATTATGTC ATATCACTGG
661GAGTTGTCAA ACCTCTTCTG TCCTTCATCA GTCCCTCCAT CCCCATCACC TTCCTTCGGA
721ACGTCACATG GGTCATTGTC AATCTCTGCA GGAATAAGGA TCCCCCACCG CCTATGGAGA
781CAGTTCAGGA GATTTTGCCA GCTTTATGTG TCCTCATATA CCATACAGAT ATAAACATTC
841TTGTAGACAC TGTTTGGGCT CTGTCATACT TGACAGATGG AGGTAATGAA CAGATACAGA
901TGGTTATTGA TTCAGGAGTT GTGCCCTTTC TTGTGCCCCT TCTGAGCCAT CAGGAAGTCA
961AAGTTCAAAC AGCAGCCCTC AGAGCAGTTG GCAACATAGT GACTGGCACC GACGAGCAGA
1021CCCAGGTTGT TCTCAATTGT GATGTCCTGT CACACTTCCA AAATCTCTTA TCACACCCAA
1081AAGAGAAGAT AAATAAGGAA GCAGTGTGGT TCCTTTCCAA CATAACAGCA GGCAACCAGC
1141AACAAGTTCA AGCTGTAATA GATGCTGGAT TAATTCCTAT GATAATTCAT CAGCTTGCTA
1201AGGGGGACTT TGGAACACAA AAAGAAGCTG CTTGGGCAAT CAGCAACTTA ACAATAAGTG
1261GCAGAAAAGA TCAGGTTGAG TACCTTGTAC AGCAGGATGT AATACCACCG TTCTGTAATT
1321TACTGTCAGT GAAAGATTCT CAAGTGGTTC AGGTGGTTCT AGATGGTCTA AAAAACATTC
1381TGATAATGGC CGGTGATGAA GCAAGCACAA TAGCTGAAAT AATAGAGGAA TGTGGAGGTT
1441TGGAGAAAAT TGAAGTTTTA CAGCAACATG AAAATGAAGA CATATATAAA TTAGCATTTG
1501AAATCATAGA TCAGTATTTC TCTGGTGATG ATATTGATGA AGATCCCTGC CTCATTCCTG
1561AAGCAACACA AGGAGGTACC TACAATTTTG ATCCAACAGC CAACCTTCAA ACAAAAGAAT
1621TTAATTTTTA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa
1681tttgttgcaa cgaac

Download FASTA (ORF) (Full)