Construct: ORF ccsbBroadEn_06530

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011430.1_s300c1, BRDN0000397626
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LMO1 (4004)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4004 LMO1 LIM domain only 1 NM_002315.3 100% 100%
2 human 4004 LMO1 LIM domain only 1 NM_001270428.2 98.9% 98.7% 0_1insATG;7T>C;13C>A
3 human 4004 LMO1 LIM domain only 1 XM_011520098.2 92.9% 92.9% 0_1ins33
4 human 4004 LMO1 LIM domain only 1 XM_011520099.2 92.9% 92.9% 0_1ins33
5 human 4004 LMO1 LIM domain only 1 XM_006718228.3 79.8% 77.7% (many diffs)
6 human 55885 LMO3 LIM domain only 3 NM_001001395.2 74.4% 83.3% (many diffs)
7 human 55885 LMO3 LIM domain only 3 NM_001243609.1 74.4% 83.3% (many diffs)
8 human 55885 LMO3 LIM domain only 3 NM_001243610.1 74.4% 83.3% (many diffs)
9 human 55885 LMO3 LIM domain only 3 NM_018640.5 74.4% 83.3% (many diffs)
10 human 55885 LMO3 LIM domain only 3 XM_006719110.4 74.4% 83.3% (many diffs)
11 human 55885 LMO3 LIM domain only 3 XM_006719111.2 74.4% 83.3% (many diffs)
12 human 55885 LMO3 LIM domain only 3 XM_011520762.1 74.4% 83.3% (many diffs)
13 human 55885 LMO3 LIM domain only 3 XM_011520763.1 74.4% 83.3% (many diffs)
14 human 55885 LMO3 LIM domain only 3 XM_024449058.1 74.4% 83.3% (many diffs)
15 human 4004 LMO1 LIM domain only 1 XM_011520100.1 67.6% 55.4% (many diffs)
16 human 4004 LMO1 LIM domain only 1 NR_073006.2 33% 1_516del;881_1001del;1106_1415del
17 mouse 109594 Lmo1 LIM domain only 1 NM_057173.3 93.1% 98.7% (many diffs)
18 mouse 109594 Lmo1 LIM domain only 1 XM_006507195.3 93.1% 98.7% (many diffs)
19 mouse 109594 Lmo1 LIM domain only 1 NM_001302205.1 91.6% 97.4% (many diffs)
20 mouse 109594 Lmo1 LIM domain only 1 NM_001302206.1 86.3% 91.6% (many diffs)
21 mouse 109593 Lmo3 LIM domain only 3 NM_207222.2 73.1% 83.3% (many diffs)
22 mouse 109593 Lmo3 LIM domain only 3 XM_006505340.1 73.1% 83.3% (many diffs)
23 mouse 109593 Lmo3 LIM domain only 3 XM_006505341.3 73.1% 83.3% (many diffs)
24 mouse 109593 Lmo3 LIM domain only 3 XM_006505342.2 73.1% 83.3% (many diffs)
25 mouse 109593 Lmo3 LIM domain only 3 XM_006505344.3 73.1% 83.3% (many diffs)
26 mouse 109593 Lmo3 LIM domain only 3 XM_011241131.2 73.1% 83.3% (many diffs)
27 mouse 109593 Lmo3 LIM domain only 3 XM_011241132.2 73.1% 83.3% (many diffs)
28 mouse 109593 Lmo3 LIM domain only 3 XM_011241133.2 73.1% 83.3% (many diffs)
29 mouse 109593 Lmo3 LIM domain only 3 XM_017321313.1 73.1% 83.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
534
ORF length:
468
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAT GGTGCTGGAC AAGGAGGACG GCGTGCCGAT GCTCTCCGTC CAGCCCAAAG
121GGAAGCAGAA GGGCTGTGCG GGCTGTAACC GCAAGATCAA GGACCGCTAT CTGCTGAAGG
181CATTGGACAA GTACTGGCAC GAAGACTGCC TCAAGTGTGC CTGCTGTGAC TGCCGCCTGG
241GCGAGGTGGG CTCCACCCTC TACACCAAGG CCAACCTCAT CCTGTGCCGA CGCGACTACC
301TGAGGCTCTT TGGCACCACA GGGAACTGTG CTGCTTGCAG CAAGCTGATC CCAGCCTTCG
361AGATGGTGAT GCGGGCCCGG GACAACGTGT ATCACCTCGA CTGCTTCGCC TGCCAGCTCT
421GCAACCAGAG ATTTTGTGTG GGAGACAAAT TCTTCCTGAA GAACAACATG ATCTTGTGTC
481AGATGGACTA TGAGGAAGGG CAGCTCAATG GCACCTTTGA ATCCCAAGTT CAGTACCCAA
541CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)