Construct: ORF ccsbBroadEn_06654

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008770.1_s300c1, BRDN0000395395
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NPM1 (4869)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4869 NPM1 nucleophosmin 1 NM_001355006.1 99.8% 100% 456A>G
2 human 4869 NPM1 nucleophosmin 1 NM_002520.6 99.8% 100% 456A>G
3 human 4869 NPM1 nucleophosmin 1 NM_199185.3 90% 90.1% 456A>G;579_580ins87
4 human 4869 NPM1 nucleophosmin 1 NM_001037738.3 87.7% 87.4% (many diffs)
5 human 4869 NPM1 nucleophosmin 1 NM_001355007.1 78.1% 78.2% 0_1ins192;264A>G
6 human 4869 NPM1 nucleophosmin 1 NM_001355009.2 77.8% 77.5% (many diffs)
7 human 4869 NPM1 nucleophosmin 1 NM_001355010.1 56.6% 56.8% 57_58ins294;162A>G;285_286ins87
8 human 4869 NPM1 nucleophosmin 1 NR_149149.1 52% 1_245del;641_642ins128;1000_1321del
9 human 29121 CLEC2D C-type lectin domain family... NR_036693.3 15.4% (many diffs)
10 mouse 18148 Npm1 nucleophosmin 1 NM_008722.3 90.1% 94.9% (many diffs)
11 mouse 18148 Npm1 nucleophosmin 1 NM_001252260.1 86.2% 90.5% (many diffs)
12 mouse 18148 Npm1 nucleophosmin 1 NM_001252261.1 78.7% 82.3% (many diffs)
13 mouse 102639044 LOC102639044 nucleophosmin pseudogene XR_389514.3 55.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
948
ORF length:
882
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA AGATTCGATG GACATGGACA TGAGCCCCCT GAGGCCCCAG AACTATCTTT
121TCGGTTGTGA ACTAAAGGCC GACAAAGATT ATCACTTTAA GGTGGATAAT GATGAAAATG
181AGCACCAGTT ATCTTTAAGA ACGGTCAGTT TAGGGGCTGG TGCAAAGGAT GAGTTGCACA
241TTGTTGAAGC AGAGGCAATG AATTACGAAG GCAGTCCAAT TAAAGTAACA CTGGCAACTT
301TGAAAATGTC TGTACAGCCA ACGGTTTCCC TTGGGGGCTT TGAAATAACA CCACCAGTGG
361TCTTAAGGTT GAAGTGTGGT TCAGGGCCAG TGCATATTAG TGGACAGCAC TTAGTAGCTG
421TGGAGGAAGA TGCAGAGTCA GAAGATGAAG AGGAGGAGGA TGTGAAACTC TTAAGTATAT
481CTGGAAAGCG GTCTGCCCCT GGAGGTGGTA GCAAGGTTCC GCAGAAAAAA GTAAAACTTG
541CTGCTGATGA AGATGATGAC GATGATGATG AAGAGGATGA TGATGAAGAT GATGATGATG
601ATGATTTTGA TGATGAGGAA GCTGAAGAAA AAGCGCCAGT GAAGAAATCT ATACGAGATA
661CTCCAGCCAA AAATGCACAA AAGTCAAATC AGAATGGAAA AGACTCAAAA CCATCATCAA
721CACCAAGATC AAAAGGACAA GAATCCTTCA AGAAACAGGA AAAAACTCCT AAAACACCAA
781AAGGACCTAG TTCTGTAGAA GACATTAAAG CAAAAATGCA AGCAAGTATA GAAAAAGGTG
841GTTCTCTTCC CAAAGTGGAA GCCAAATTCA TCAATTATGT GAAGAATTGC TTCCGGATGA
901CTGACCAAGA GGCTATTCAA GATCTCTGGC AGTGGAGGAA GTCTCTTTAC CCAACTTTCT
961TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)