Construct: ORF ccsbBroadEn_07317

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009045.1_s300c1, BRDN0000390610
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ARHGEF7 (8874)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001113512.2 99.8% 99.6% 877C>A;1504A>G;2068A>T
2 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_145735.3 96.1% 95.9% (many diffs)
3 human 8874 ARHGEF7 Rho guanine nucleotide exch... XM_017020814.1 94.7% 94.4% (many diffs)
4 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001113511.2 93.6% 93.3% (many diffs)
5 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354047.1 92.8% 90.7% (many diffs)
6 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001320852.1 86.7% 85% (many diffs)
7 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354046.1 86.7% 85.1% (many diffs)
8 human 8874 ARHGEF7 Rho guanine nucleotide exch... XM_006719956.3 85.5% 83.8% (many diffs)
9 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001320853.2 83.2% 81.3% (many diffs)
10 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001330597.2 82.8% 82.6% (many diffs)
11 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001330598.2 82.8% 82.6% (many diffs)
12 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354056.1 82.8% 82.6% (many diffs)
13 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354057.2 82.8% 82.6% (many diffs)
14 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354058.2 82.8% 82.6% (many diffs)
15 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354059.2 82.8% 82.6% (many diffs)
16 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354060.2 82.8% 82.6% (many diffs)
17 human 8874 ARHGEF7 Rho guanine nucleotide exch... XM_017020815.1 82% 78.5% (many diffs)
18 human 8874 ARHGEF7 Rho guanine nucleotide exch... XM_017020816.1 82% 80% (many diffs)
19 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354048.1 74.4% 72.8% (many diffs)
20 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354049.2 74.4% 72.8% (many diffs)
21 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354050.2 74.4% 72.8% (many diffs)
22 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354051.2 74.4% 72.8% (many diffs)
23 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001113513.2 73.8% 71.8% (many diffs)
24 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001320851.2 73.8% 71.8% (many diffs)
25 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354052.2 73.8% 71.8% (many diffs)
26 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354053.2 73.8% 71.8% (many diffs)
27 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_003899.5 73.8% 71.8% (many diffs)
28 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354054.2 72.7% 70.7% (many diffs)
29 human 8874 ARHGEF7 Rho guanine nucleotide exch... XM_017020819.1 72.7% 70.7% (many diffs)
30 human 8874 ARHGEF7 Rho guanine nucleotide exch... XM_017020820.1 72.7% 70.7% (many diffs)
31 human 8874 ARHGEF7 Rho guanine nucleotide exch... XM_017020821.2 72.7% 70.7% (many diffs)
32 human 8874 ARHGEF7 Rho guanine nucleotide exch... XM_017020822.1 72.7% 70.7% (many diffs)
33 human 8874 ARHGEF7 Rho guanine nucleotide exch... XM_017020823.2 72.7% 70.7% (many diffs)
34 human 8874 ARHGEF7 Rho guanine nucleotide exch... XM_024449428.1 72.7% 70.7% (many diffs)
35 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001320854.2 72% 70.1% (many diffs)
36 human 8874 ARHGEF7 Rho guanine nucleotide exch... XR_001749712.1 69.6% (many diffs)
37 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354055.2 64.6% 61.7% (many diffs)
38 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354061.2 62.1% 61.6% (many diffs)
39 human 8874 ARHGEF7 Rho guanine nucleotide exch... XM_017020829.2 62.1% 61.6% (many diffs)
40 human 8874 ARHGEF7 Rho guanine nucleotide exch... XM_011521133.2 60.6% 60.4% (many diffs)
41 human 8874 ARHGEF7 Rho guanine nucleotide exch... XM_017020828.1 53.7% 50.8% (many diffs)
42 human 8874 ARHGEF7 Rho guanine nucleotide exch... XR_002957481.1 39.6% (many diffs)
43 mouse 54126 Arhgef7 Rho guanine nucleotide exch... NM_001113517.1 83.6% 90.6% (many diffs)
44 mouse 54126 Arhgef7 Rho guanine nucleotide exch... XM_006508843.3 76.3% 80.3% (many diffs)
45 mouse 54126 Arhgef7 Rho guanine nucleotide exch... XM_006508841.2 75% 80.4% (many diffs)
46 mouse 54126 Arhgef7 Rho guanine nucleotide exch... XM_006508845.3 71.8% 76.9% (many diffs)
47 mouse 54126 Arhgef7 Rho guanine nucleotide exch... XM_006508844.2 67.4% 72.2% (many diffs)
48 mouse 54126 Arhgef7 Rho guanine nucleotide exch... NM_001113518.1 64.1% 68.5% (many diffs)
49 mouse 54126 Arhgef7 Rho guanine nucleotide exch... XM_017312901.1 62.7% 66% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2325
ORF length:
2259
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA TTCCGCCGAG CAAACCGTTA CGTGGCTCAT CACTCTGGGG GTGCTGGAGT
121CGCCCAAAAA AACCATCTCG GACCCGGAGG GCTTTCTGCA GGCGTCGCTG AAGGATGGGG
181TGGTCCTCTG CAGGCTGCTG GAGCGCCTGC TCCCCGGGAC CATCGAGAAA ACGTTTGATG
241CAAATGATTT GTATCAGGGG CAGAATTTTA ACAAGGTCCT CAGTTCCTTA GTGACTCTAA
301ATAAAGTAAC AGCAGACATC GGGCTGGGGA GTGACTCCGT GTGTGCCCGG CCCTCGTCTC
361ACCGCATAAA GTCTTTTGAC TCCCTTGGAT CACAGTCTTT GCACACTCGG ACTTCAAAAC
421TGTTCCAGGG CCAGTATCGG AGTTTGGACA TGACCGATAA TAGCAACAAT CAACTGGTAG
481TAAGAGCAAA GTTTAACTTC CAGCAGACCA ATGAGGACGA GCTTTCCTTC TCAAAAGGAG
541ACGTCATCCA TGTCACCCGT GTGGAAGAGG GAGGCTGGTG GGAGGGCACA CTCAACGGCC
601GGACCGGCTG GTTCCCCAGC AACTACGTGC GCGAGGTCAA GGCCAGCGAG AAGCCTGTGT
661CTCCCAAATC AGGAACACTG AAGAGCCCTC CCAAAGGATT TGATACGACT GCCATAAACA
721AAAGCTATTA CAATGTGGTG CTACAGAATA TTTTAGAAAC AGAAAATGAA TATTCTAAAG
781AACTTCAGAC TGTGCTTTCA ACGTACCTAC GGCCATTGCA GACCAGTGAG AAGTTAAGTT
841CAGCAAACAT TTCATATTTA ATGGGAAATC TAGAAGAAAT ATGTTCTTTC CAGCAAATGC
901TCGTACAGTC TTTAGAAGAA TGCACCAAGT TGCCCGAAGC TAAGCAGAGA GTCGGAGGCT
961GCTTTTTAAA CCTGATGCCA CAGATGAAAA CCCTGTACCT CACGTATTGT GCCAATCACC
1021CTTCTGCAGT GAATGTCCTC ACGGAACACA GTGAGGAGTT GGGGGAGTTC ATGGAGACCA
1081AAGGTGCCAG CAGCCCTGGG ATTCTCGTGC TGACCACGGG CCTGAGCAAA CCCTTCATGC
1141GCCTGGATAA ATACCCTACG CTGCTCAAAG AGCTCGAGAG ACACATGGAG GATTATCATA
1201CAGATAGACA AGATATTCAA AAATCCATGG CTGCCTTCAA AAACCTTTCA GCCCAATGTC
1261AAGAAGTCCG GAAGAGGAAA GAGCTTGAGC TGCAGATCCT GACGGAAGCC ATCCGGAACT
1321GGGAGGGCGA TGACATTAAA ACTCTGGGCA ACGTCACTTA CATGTCCCAG GTCCTGATTC
1381AGTGTGCCGG AAGTGAGGAA AAGAATGAAA GATATCTTCT ACTCTTCCCA AATGTTTTGC
1441TAATGTTGTC TGCCAGTCCT AGGATGAGTG GCTTTATCTA TCAGGGAAAG CTTCCAACGA
1501CAGGAATGAC AATCACAAAG CTTGAGGACA GTGAAAATCA TAGAAATGCA TTTGAAATAT
1561CAGGGAGCGT GATTGAGCGG ATATTAGTGT CGTGCAACAA CCAGCAGGAT CTGCAGGAAT
1621GGGTGGAGCA CCTACAGAAG CAAACGAAGG TCACGTCTGT GGGAAACCCC ACCATAAAGC
1681CTCATTCAGT GCCATCTCAT ACCCTCCCCT CCCACCCGGT CACTCCGTCC AGCAAGCACG
1741CAGACAGCAA GCCCGCGCCG CTGACGCCCG CCTACCACAC GCTGCCCCAC CCCTCCCACC
1801ACGGCACCCC GCACACCACC ATCAACTGGG GACCCCTGGA GCCTCCGAAA ACACCCAAGC
1861CCTGGAGCCT GAGCTGCCTG CGGCCCGCGC CTCCCCTCCG GCCCTCAGCT GCTCTCTGCT
1921ACAAGGAGGA TCTTAGTAAG AGCCCTAAGA CCATGAAAAA GCTGCTGCCC AAGCGCAAAC
1981CTGAACGGAA GCCTTCAGAT GAGGAGTTCG CGTCCCGGAA AAGCACAGCT GCTTTGGAAG
2041AAGATGCTCA GATTCTGAAA GTCATTGAAG CTTACTGCAC CAGCGCCAAA ACAAGGCAAA
2101CACTCAATTC AACATGGCAA GGCACTGACC TGTTGCATAA TCACGTCTTG GCTGATGATG
2161ACCAACCAAG CCTAGACTCC CTGGGGCGTC GCAGTAGCCT TTCTCGTTTG GAGCCTTCAG
2221ACCTCTCGGA AGACTCTGAC TATGACAGTA TATGGACAGC CCATAGTTAC AGAATGGGTT
2281CTACATCTCG TAAGAGCTGT TGCTCATATA TCTCTCACCA GAACTACCCA ACTTTCTTGT
2341ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)