Construct: ORF ccsbBroadEn_07388
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000793.1_s300c1, BRDN0000393723
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TRIP4 (9325)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9325 | TRIP4 | thyroid hormone receptor in... | NM_016213.5 | 99.8% | 100% | 1258T>C;1596G>A |
| 2 | human | 9325 | TRIP4 | thyroid hormone receptor in... | NR_135855.2 | 80.1% | (many diffs) | |
| 3 | human | 9325 | TRIP4 | thyroid hormone receptor in... | NM_001321924.2 | 60.2% | 60.4% | 0_1ins690;568T>C;906G>A |
| 4 | mouse | 56404 | Trip4 | thyroid hormone receptor in... | NM_019797.4 | 88.8% | 88.6% | (many diffs) |
| 5 | mouse | 56404 | Trip4 | thyroid hormone receptor in... | XM_006511296.3 | 88.8% | 88.6% | (many diffs) |
| 6 | mouse | 56404 | Trip4 | thyroid hormone receptor in... | XM_006511298.3 | 88.8% | 88.6% | (many diffs) |
| 7 | mouse | 56404 | Trip4 | thyroid hormone receptor in... | XM_006511299.3 | 88.8% | 88.6% | (many diffs) |
| 8 | mouse | 56404 | Trip4 | thyroid hormone receptor in... | XM_017313492.1 | 88.8% | 88.6% | (many diffs) |
| 9 | mouse | 56404 | Trip4 | thyroid hormone receptor in... | NM_001170907.1 | 81.9% | 78.9% | (many diffs) |
| 10 | mouse | 56404 | Trip4 | thyroid hormone receptor in... | XM_017313493.1 | 81.9% | 78.9% | (many diffs) |
| 11 | mouse | 56404 | Trip4 | thyroid hormone receptor in... | XM_017313494.1 | 69.4% | 66.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1809
- ORF length:
- 1743
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGTGGCTGGG GCGGTGTCCG GGGAGCCGCT GGTGCACTGG TGCACCCAGC 121 AGTTGCGGAA GACTTTCGGC CTGGATGTCA GCGAGGAGAT CATTCAGTAC GTTTTGTCAA 181 TTGAGAGTGC TGAAGAGATA CGAGAATATG TTACTGATCT CCTCCAGGGA AATGAAGGCA 241 AAAAAGGTCA ATTCATAGAA GAACTTATAA CCAAATGGCA AAAGAATGAT CAGGAGTTGA 301 TTTCGGATCC TTTGCAGCAG TGCTTCAAAA AAGATGAAAT TTTAGATGGG CAGAAATCAG 361 GCGACCATCT AAAGCGGGGT AGGAAGAAAG GGAGAAACAG ACAGGAAGTT CCTGCATTTA 421 CTGAACCTGA CACGACTGCA GAGGTTAAAA CACCTTTTGA TTTGGCCAAG GCACAAGAGA 481 ACAGCAACTC CGTAAAGAAG AAGACAAAGT TTGTCAATTT ATACACAAGA GAGGGACAGG 541 ACAGGCTTGC AGTCCTGCTC CCTGGTCGTC ACCCTTGTGA TTGCCTGGGC CAGAAGCACA 601 AGCTCATCAA TAACTGTCTG ATCTGTGGGC GCATTGTCTG TGAACAAGAA GGCTCAGGCC 661 CTTGCTTATT CTGTGGCACT CTGGTGTGTA CTCATGAGGA ACAAGATATT TTACAGCGTG 721 ACTCAAACAA GAGCCAGAAA CTGCTAAAGA AACTCATGTC AGGAGTGGAG AATTCTGGAA 781 AGGTGGACAT CTCTACCAAG GACCTTCTTC CTCATCAAGA ATTGCGAATT AAGTCTGGTC 841 TGGAGAAGGC TATCAAGCAT AAAGACAAAC TGTTAGAGTT TGACAGAACT AGTATTCGAA 901 GGACCCAAGT CATTGATGAT GAGTCAGATT ACTTTGCCAG TGATTCTAAC CAATGGTTGT 961 CCAAACTTGA GCGGGAAACC TTGCAGAAGC GAGAGGAGGA GCTGAGAGAA CTTCGACACG 1021 CCTCTCGACT TTCTAAGAAG GTCACCATTG ACTTTGCAGG AAGGAAGATC CTGGAAGAAG 1081 AAAATTCACT AGCAGAGTAT CATAGCAGAC TAGATGAGAC AATACAGGCC ATTGCCAATG 1141 GAACCTTGAA CCAGCCACTG ACCAAATTGG ATAGATCTTC TGAAGAGCCT TTGGGAGTTC 1201 TGGTAAATCC CAACATGTAC CAGTCCCCTC CCCAGTGGGT TGACCACACA GGTGCAGCCT 1261 CACAGAAGAA GGCTTTCCGT TCTTCAGGAT TTGGACTAGA GTTCAACTCA TTTCAGCACC 1321 AGCTGCGAAT CCAGGATCAA GAATTTCAGG AAGGCTTTGA TGGTGGCTGG TGCCTCTCTG 1381 TACATCAGCC CTGGGCTTCT CTGCTTGTCA GAGGGATTAA AAGGGTGGAG GGCAGATCCT 1441 GGTACACCCC CCACAGAGGA CGACTTTGGA TAGCAGCCAC AGCTAAAAAA CCCTCCCCTC 1501 AAGAAGTCTC AGAACTCCAG GCTACATATC GTCTTCTTCG TGGGAAAGAT GTGGAATTTC 1561 CTAATGACTA TCCGTCAGGT TGTCTTCTGG GCTGTGTGGA CCTAATTGAC TGCTTGTCCC 1621 AGAAGCAATT TAAGGAGCAG TTTCCAGACA TCAGTCAAGA ATCTGATTCT CCATTTGTTT 1681 TCATCTGCAA AAATCCTCAG GAAATGGTTG TGAAGTTTCC TATTAAAGGA AATCCAAAAA 1741 TCTGGAAATT GGATTCCAAG ATCCATCAAG GAGCAAAGAA GGGGTTAATG AAGCAGAATA 1801 AAGCTGTCTG CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 1861 tttgttgcaa cgaac