Construct: ORF ccsbBroadEn_07754
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002019.1_s300c1, BRDN0000395836
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FGFR1OP (11116)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11116 | FGFR1OP | FGFR1 oncogene partner | NM_194429.3 | 99.8% | 99.4% | 188A>G;753G>T |
| 2 | human | 11116 | FGFR1OP | FGFR1 oncogene partner | NM_007045.4 | 94.8% | 94.4% | 188A>G;517_576del;813G>T |
| 3 | human | 11116 | FGFR1OP | FGFR1 oncogene partner | NM_001278690.1 | 88.5% | 84.8% | (many diffs) |
| 4 | mouse | 75296 | Fgfr1op | Fgfr1 oncogene partner | NM_201230.5 | 85.9% | 84.1% | (many diffs) |
| 5 | mouse | 75296 | Fgfr1op | Fgfr1 oncogene partner | XM_006523356.2 | 85.4% | 83.9% | (many diffs) |
| 6 | mouse | 75296 | Fgfr1op | Fgfr1 oncogene partner | XM_006523355.2 | 82.3% | 80.1% | (many diffs) |
| 7 | mouse | 75296 | Fgfr1op | Fgfr1 oncogene partner | NM_001197046.1 | 82% | 79.9% | (many diffs) |
| 8 | mouse | 75296 | Fgfr1op | Fgfr1 oncogene partner | XM_006523357.2 | 71.3% | 68% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1203
- ORF length:
- 1137
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGCGACGGCG GCCGCAGTGG TGGCCGAGGA GGACACGGAG CTGCGGGACC 121 TGCTGGTGCA GACGCTGGAG AACAGCGGGG TCCTGAACCG CATCAAGGCT GAACTCCGAG 181 CAGCTGTGTT TTTAGCACTA GAGGAGCAAG AAAAAGTAGA GAACAAAACT CCTTTAGTTA 241 ATGAGAGCCT GAGAAAGTTT TTAAATACCA AAGACGGTCG TTTAGTGGCT AGTCTTGTTG 301 CAGAATTTCT TCAGTTTTTT AACCTTGACT TTACTTTGGC TGTTTTTCAA CCTGAAACTA 361 GCACACTGCA AGGTCTCGAA GGTCGAGAGA ATTTAGCCCG AGATTTAGGT ATAATTGAAG 421 CAGAAGGTAC TGTGGGTGGA CCCTTATTAT TAGAAGTGAT CAGGCGCTGT CAACAGAAAG 481 AAAAAGGGCC AACCACTGGG GAAGGTGCAC TTGATCTATC TGATGTACAT TCTCCACCAA 541 AGTCACCAGA GGGAAAAACA AGTGCACAGA CAACACCAAG TAAGAAGGCC AATGATGAGG 601 CCAATCAGAG TGATACAAGT GTCTCCTTGT CAGAACCCAA GAGCAAAAGC AGCCTTCACT 661 TACTGTCCCA TGAAACAAAA ATTGGATCTT TTCTAAGCAA CAGAACTTTA GATGGCAAAG 721 ACAAAGCTGG CCTTTGTCCA GATGAAGATG ATATGGAAGG AGATTCTTTC TTTGATGATC 781 CCATTCCTAA GCCAGAGAAA ACTTACGGTT TGAGGAATGA ACCTAGGAAG CAAGCAGGAA 841 GTCTGGCCTC GCTCTCGGAT GCACCCCCCT TAAAAAGTGG ACTCAGCTCC CTGGCGGGAG 901 CCCCTTCTTT AAAAGACTCT GAGAGTAAAA GGGGAAATAC AGTTTTGAAA GATCTGAAAT 961 TGATCAGTGA TAAAATTGGA TCACTTGGAT TAGGAACTGG AGAAGATGAT GACTATGTTG 1021 ATGATTTTAA TAGTACCAGC CATCGCTCAG AGAAAAGTGA GATAAGTATT GGTGAAGAGA 1081 TAGAAGAAGA CCTTTCTGTG GAAATAGATG ACATCAATAC CAGTGATAAG CTTGATGACC 1141 TCACACAAGA TCTGACTGTA TCCCAGCTCA GTGATGTTGC GGATTATCTG GAAGATGTTG 1201 CATACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 1261 gcaacgaac