Construct: ORF ccsbBroadEn_07762
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004033.1_s300c1, BRDN0000387438
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LDB3 (11155)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11155 | LDB3 | LIM domain binding 3 | NM_001080116.1 | 99.8% | 100% | 588T>C |
| 2 | human | 11155 | LDB3 | LIM domain binding 3 | NM_001368067.1 | 99.8% | 100% | 588T>C |
| 3 | human | 11155 | LDB3 | LIM domain binding 3 | NM_001368068.1 | 99.8% | 100% | 588T>C |
| 4 | human | 11155 | LDB3 | LIM domain binding 3 | NM_001080115.2 | 76.9% | 69.7% | (many diffs) |
| 5 | human | 11155 | LDB3 | LIM domain binding 3 | NM_001368063.1 | 76.9% | 69.7% | (many diffs) |
| 6 | human | 11155 | LDB3 | LIM domain binding 3 | NM_001171611.2 | 70.7% | 69.8% | (many diffs) |
| 7 | human | 11155 | LDB3 | LIM domain binding 3 | NM_001080114.2 | 43.8% | 41.6% | (many diffs) |
| 8 | human | 11155 | LDB3 | LIM domain binding 3 | NM_001368066.1 | 39.6% | 37.3% | (many diffs) |
| 9 | human | 11155 | LDB3 | LIM domain binding 3 | NM_001368064.1 | 36.9% | 30.8% | (many diffs) |
| 10 | human | 11155 | LDB3 | LIM domain binding 3 | NM_001368065.1 | 36.9% | 30.8% | (many diffs) |
| 11 | human | 11155 | LDB3 | LIM domain binding 3 | NM_001171610.2 | 36.8% | 34.4% | (many diffs) |
| 12 | human | 11155 | LDB3 | LIM domain binding 3 | NM_007078.3 | 33.6% | 27.8% | (many diffs) |
| 13 | mouse | 24131 | Ldb3 | LIM domain binding 3 | XM_006519019.3 | 91.6% | 97.1% | (many diffs) |
| 14 | mouse | 24131 | Ldb3 | LIM domain binding 3 | NM_001039075.2 | 90% | 95.4% | (many diffs) |
| 15 | mouse | 24131 | Ldb3 | LIM domain binding 3 | NM_001039076.2 | 73.8% | 68.8% | (many diffs) |
| 16 | mouse | 24131 | Ldb3 | LIM domain binding 3 | XM_006519018.3 | 40.2% | 40.3% | (many diffs) |
| 17 | mouse | 24131 | Ldb3 | LIM domain binding 3 | NM_001039073.2 | 39.9% | 40% | (many diffs) |
| 18 | mouse | 24131 | Ldb3 | LIM domain binding 3 | NM_001039072.2 | 36.5% | 36.3% | (many diffs) |
| 19 | mouse | 24131 | Ldb3 | LIM domain binding 3 | NM_001039074.2 | 36.3% | 36.1% | (many diffs) |
| 20 | mouse | 24131 | Ldb3 | LIM domain binding 3 | XM_006519017.3 | 36.3% | 36.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 67
- ORF end:
- 916
- ORF length:
- 849
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG NNACAAAAAA 61 GNTGGCATGT CTTACAGTGT GACCCTGACT GGGCCCGGGC CCTGGGGCTT CCGTCTGCAG 121 GGGGGCAAGG ACTTCAACAT GCCCCTCACT ATCTCCCGGA TCACACCAGG CAGCAAGGCA 181 GCCCAGTCCC AGCTCAGCCA GGGTGACCTC GTGGTGGCCA TTGACGGCGT CAACACAGAC 241 ACCATGACCC ACCTGGAAGC CCAGAACAAG ATCAAGTCTG CCAGCTACAA CTTGAGCCTC 301 ACCCTGCAGA AATCAAAGCG TCCCATTCCC ATCTCCACGA CAGCACCTCC AGTCCAGACC 361 CCTCTGCCGG TGATCCCTCA CCAGAAGGTG GTAGTCAACT CTCCAGCCAA CGCCGACTAC 421 CAGGAACGCT TCAACCCCAG TGCCCTGAAG GACTCGGCCC TGTCCACCCA CAAGCCCATC 481 GAGGTGAAGG GGCTGGGCGG CAAGGCCACC ATCATCCATG CGCAGTACAA CACGCCCATC 541 AGCATGTATT CCCAGGATGC CATCATGGAT GCCATCGCTG GGCAGGCCCA AGCCCAAGGC 601 AGTGACTTCA GTGGGAGCCT CCCTATTAAG GACCTTGCCG TAGACAGCGC CTCCCCCGTC 661 TACCAGGCTG TGATTAAGAG CCAGAACAAG CCAGAAGATG AGGCTGACGA GTGGGCACGC 721 CGTTCCTCCA ACCTGCAGTC TCGCTCCTTC CGCATCCTGG CCCAGATGAC GGGGACAGAA 781 TTCATGCAAG ACCCTGATGA AGAAGCTCTG CGAAGGTCAA GGGAAAGGTT TGAAACGGAA 841 CGTAACAGCC CACGTTTTGC CAAATTGCGC AACTGGCACC ATGGCCTTTC AGCCCAAATC 901 CTTAATGTTA AAAGCTACCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc 961 ttatcaattt gttgcaacga ac