Construct: ORF ccsbBroadEn_07805

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017328.1_s300c1, BRDN0000397830
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SCAF8 (22828)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 22828 SCAF8 SR-related CTD associated f... NM_001286199.1 99.9% 99.9% 890A>T;3048C>T
2 human 22828 SCAF8 SR-related CTD associated f... NM_014892.4 99.9% 99.9% 890A>T;3048C>T
3 human 22828 SCAF8 SR-related CTD associated f... NM_001286194.1 96.5% 96.5% 1_135del;1025A>T;3183C>T
4 human 22828 SCAF8 SR-related CTD associated f... NM_001286189.1 95% 94.9% (many diffs)
5 human 22828 SCAF8 SR-related CTD associated f... NM_001286188.1 94.1% 94.1% 1_234del;1124A>T;3282C>T
6 mouse 106583 Scaf8 SR-related CTD-associated f... NM_134123.3 88.3% 91.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3879
ORF length:
3813
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA GGCCGTGAAG ACCTTCAATA GCGAGTTGTA TTCCCTGAAT GACTATAAAC
121CACCCATTTC GAAAGCGAAA ATGACCCAAA TTACTAAGGC AGCCATCAAA GCTATTAAGT
181TCTATAAACA TGTGGTACAG AGTGTTGAGA AGTTTATTCA GAAATGTAAA CCAGAATACA
241AAGTACCTGG ACTTTATGTT ATTGACTCCA TTGTGCGACA ATCCCGACAT CAGTTTGGTC
301AAGAAAAGGA TGTGTTTGCA CCCAGATTTA GTAATAACAT CATTAGCACT TTCCAGAATT
361TATATCGTTG CCCTGGGGAT GACAAGAGTA AAATAGTGAG AGTACTAAAC TTATGGCAGA
421AGAATAATGT ATTTAAGAGT GAGATTATTC AGCCCCTTTT GGATATGGCA GCCGGGATTC
481CGCCTCCAGT TGTCACACCT GTTTTGGCCA GCACTACCAC TGCTATGAGC AATACTCCAG
541GAACTCCTGT GACACCTGTT ACTCCGGCCA ATGTGGTCCA AGGCTTACCT GATCCGTGGG
601TATCTCAGAT AACAAATACA GATACACTTG CGGCTGTAGC TCAGATCTTG CAAAGTCCTC
661AAGGCCAGCA GCTTCAACAA TTAATACAAA CCTTACAGAT ACAACAACAG AAGCCCCAGC
721CTTCCATTCT GCAGGCCCTA GATGCTGGTC TTGTTGTTCA GTTGCAAGCT CTTACGGCAC
781AACTTACAGC TGCAGCTGCA GCTGCCAACA CTCTTACTCC CTTAGAACAG GGAGTCTCCT
841TTAACAAGAA GTTGATGGAT AGGTTTGATT TTGGGGAAGA CTCTGAGCAT AGTGAAGAAC
901CCAAAAAGGA AATTCCAGCT TCACAACTTT CTCACGTTTC AGAATCTGTG AACATTTCCA
961TTTTTCATCA GATAGCAGAA CAACTACAAC AGCAAAACCT AGAACATCTC AGACAGCAGC
1021TCTTGGAGCA GCAACAGCCT CAAAAGGCCA CTCCTCAGGA TAGTCAGGAA GGAACCTTTG
1081GGTCAGAGCA TTCAGCGTCA CCATCACAAG GGAGTAGTCA GCAGCATTTT CTTGAACCTG
1141AAGTCAATTT GGATGATTCC ATAGATATTC AGCAACAGGA TATGGATATA GATGAAGGGC
1201AAGATGGAGT GGAAGAGGAG GTCTTTGAAC AAGAAGCTAA GAAAGTGGCG GTTCGCTCAA
1261GATCAAGAAC ACATTCACGA TCTCGTTCAA GATCACCAAG AAAACGAAGG TCTAGGTCAC
1321GGTCTGGCTC TAGAAAGCGT AAACACAGAA AGCGATCACG CTCCCGCTCA AGAGAAAGAA
1381AGAGGAAATC ATCACGGTCG TATTCAAGTG AAAGGAGAGC CAGAGAAAGG GAGAAAGAAC
1441GACAGAAAAA GGGATTACCT CCAATTAGAT CTAAAACACT AAGTGTATGT AGTACTACTC
1501TCTGGGTTGG GCAAGTGGAC AAGAAGGCAA CACAGCAAGA CTTAACCAAC CTGTTTGAAG
1561AGTTTGGACA GATTGAATCC ATTAATATGA TTCCTCCCCG GGGCTGTGCT TATGTCTGCA
1621TGGTTCATCG ACAAGATGCA TTTCGAGCTC TTCAGAAACT CAGTTCTGGA TCATATAAAA
1681TTGGGTCCAA GGTCATTAAG ATCGCTTGGG CTTTAAACAA AGGTGTAAAA ACAGAATACA
1741AACAATTCTG GGATGTGGAT CTTGGAGTTA CATATATACC ATGGGAAAAA GTTAAAGTGG
1801ATGACTTGGA AGGTTTTGCA GAAGGAGGCA TGATTGATCA GGAGACTGTA AATACTGAGT
1861GGGAAACTGT GAAAAGCTCA GAACCTGTTA AAGAGACGGT CCAGACAACT CAGAGCCCAA
1921CTCCAGTTGA AAAGGAGACA GTGGTCACAA CCCAGGCAGA GGTTTTCCCT CCTCCTGTTG
1981CTATGTTGCA GATTCCAGTG GCGCCAGCCG TGCCTACAGT TAGTTTAGTC CCACCAGCAT
2041TTCCTGTGTC GATGCCGGTT CCTCCTCCTG GATTCAGTCC AATCCCTCCA CCTCCTTTTT
2101TAAGAGCAAG TTTTAACCCT TCACAACCAC CACCTGGTTT CATGCCGCCT CCAGTTCCCC
2161CACCTGTTGT GCCACCCCCT ACGATTCCAC CAGTAGTACC AACATCTTTA GTGCAGCCGT
2221CATTATCCAT GACACCGGAA ACTGTGAAAG ATGTTGGATT TGGTAGCCTT GTTATACCAG
2281GCGGTTCTGT TGCCAGCAAT CTTGCTACTT CCGCTCTGCC AGCTGGAAAT GTTTTTAATG
2341CTCCAACTAA ACAGGCAGAG CCTGAAGAAA AAGTACCTCA TCTTATAGAC CACCAGATTT
2401CTTCTGGTGA AAACACCAGA TCAGTGATTC CAAATGATAT TTCAAGTAAT GCTGCAATTT
2461TAGGAGGACA GCCGCCAAAT GTGACAAGCA ATTCTGGAAT TCTGGGAGTC CAAAGACCAA
2521ATGTATCAAG TAATTCTGAA ATTCTTGGGG TCCGGCCATC TAATGTTTCC AGTAGTTCTG
2581GGATTATTGC AGCCCAACCA CCAAATATTC TAAATAACTC TGGAATATTG GGAATACAGC
2641CACCCAGTGT GTCAAATAGT TCTGGACTTT TGGGAGTGCT ACCCCCAAAT ATACCTAACA
2701ATTCTGGACT TGTAGGAGTA CAGCCACCAA ATGTTCCAAA TACTCCTGGA CTTCTGGGAA
2761CACAGCCACC AGCTGGACCT CAAAACTTAC CCCCTTTAAG TATCCCTAAT CAAAGGATGC
2821CCACAATGCC AATGTTAGAC ATTCGTCCGG GACTAATACC ACAGGCACCT GGGCCAAGAT
2881TCCCTTTAAT ACAGCCTGGA ATTCCACCCC AACGGGGAAT CCCACCCCCA TCGGTACTTG
2941ATTCAGCTCT TCATCCACCA CCCCGTGGAC CTTTTCCTCC AGGAGATATT TTTAGTCAAC
3001CAGAAAGACC TTTTTTAGCT CCTGGAAGAC AAAGCGTAGA CAATGTTACT AACCCAGAAA
3061AAAGGATACC ACTTGGGAAT GATAACATTC AACAGGAAGG AGATAGAGAT TATCGGTTTC
3121CTCCTATAGA AACCAGGGAA AGCATTAGTA GACCTCCCCC TGTGGATGTT AGAGATGTGG
3181TTGGGCGGCC TATAGATCCA AGAGAAGGTC CTGGACGGCC TCCACTAGAT GGTAGGGATC
3241ATTTTGGAAG ACCTCCTGTA GATATAAGAG AGAATCTTGT GAGGCCAGGT ATAGATCATC
3301TTGGTCGAAG AGACCACTTT GGCTTTAATC CAGAGAAGCC CTGGGGGCAT AGAGGAGATT
3361TTGATGAGAG AGAGCATCGG GTTCTACCGG TCTATGGTGG TCCAAAAGGC TTACATGAAG
3421AAAGAGGTAG ATTTCGGTCT GGAAACTATC GATTTGATCC TAGAAGTGGT CCTTGGAACC
3481GAGGATTTGG ACAAGAAGTT CACAGAGATT TTGATGACCG CAGAAGACCC TGGGAGAGGC
3541AAAGGGATAG GGATGACAGA GATTTTGATT TCTGCAGAGA AATGAATGGA AATCGTCTTG
3601GACGAGACAG AATTCAAAAC ACTTGGGTTC CCCCTCCTCA TGCTCGGGTT TTTGATTATT
3661TTGAAGGGGC CACTTCTCAA CGAAAAGGTG ATAATGTGCC TCAGGTTAAT GGTGAAAATA
3721CAGAGAGACA TGCTCAGCCA CCACCTATAC CAGTACAGAA TGATCCTGAA CTTTATGAAA
3781AACTGACATC TTCAAATGAA ATAAACAAGG AGAAGAGTGA CACAGTTGCT GATATAGAAA
3841GTGAACCAGT GGTAGAAAGC ACAGAAACTG AGGGGACATA CCCAACTTTC TTGTACAAAG
3901Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.