Construct: ORF ccsbBroadEn_07848

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007245.1_s300c1, BRDN0000385441
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DIP2A (23181)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23181 DIP2A disco interacting protein 2... NM_206889.3 99.8% 99.8% 174A>G;262A>G;2079G>A
2 human 23181 DIP2A disco interacting protein 2... NM_206890.3 94.4% 94.4% (many diffs)
3 human 23181 DIP2A disco interacting protein 2... XM_011529502.1 91.2% 90.7% (many diffs)
4 human 23181 DIP2A disco interacting protein 2... XM_017028305.1 91.2% 90.7% (many diffs)
5 human 23181 DIP2A disco interacting protein 2... NM_206891.3 90.5% 89.9% (many diffs)
6 human 23181 DIP2A disco interacting protein 2... NM_001146115.2 89.6% 89.6% (many diffs)
7 human 23181 DIP2A disco interacting protein 2... NM_001353944.2 85.1% 85% (many diffs)
8 human 23181 DIP2A disco interacting protein 2... XM_011529501.1 73.2% 72.8% (many diffs)
9 human 23181 DIP2A disco interacting protein 2... XM_017028304.1 64.1% 63.8% (many diffs)
10 human 23181 DIP2A disco interacting protein 2... XM_017028303.1 59.9% 59.6% (many diffs)
11 human 23181 DIP2A disco interacting protein 2... XM_017028301.1 59.4% 59.1% (many diffs)
12 human 23181 DIP2A disco interacting protein 2... XM_017028300.1 58.5% 58.2% (many diffs)
13 human 23181 DIP2A disco interacting protein 2... NM_001353943.1 56.4% 56.1% (many diffs)
14 human 23181 DIP2A disco interacting protein 2... NM_015151.4 56.4% 56.1% (many diffs)
15 human 23181 DIP2A disco interacting protein 2... XM_017028295.2 56.4% 56.1% (many diffs)
16 human 23181 DIP2A disco interacting protein 2... NM_001353942.1 56.3% 56.1% (many diffs)
17 human 23181 DIP2A disco interacting protein 2... XM_017028294.2 56.3% 56.1% (many diffs)
18 human 23181 DIP2A disco interacting protein 2... NM_001146116.1 56.1% 55.8% (many diffs)
19 human 23181 DIP2A disco interacting protein 2... XM_017028293.1 55.1% 54.9% (many diffs)
20 human 23181 DIP2A disco interacting protein 2... XM_011529492.2 55.1% 54.8% (many diffs)
21 human 23181 DIP2A disco interacting protein 2... XM_017028291.1 55.1% 54.8% (many diffs)
22 human 23181 DIP2A disco interacting protein 2... XM_017028292.1 55.1% 54.8% (many diffs)
23 human 23181 DIP2A disco interacting protein 2... XM_017028298.2 53.6% 53.4% (many diffs)
24 human 23181 DIP2A disco interacting protein 2... XM_017028297.1 52.5% 52.2% (many diffs)
25 human 23181 DIP2A disco interacting protein 2... XM_017028302.2 51% 50.7% (many diffs)
26 human 23181 DIP2A disco interacting protein 2... XM_017028299.1 49.9% 49.6% (many diffs)
27 mouse 64451 Dip2a disco interacting protein 2... XR_001779571.1 78.3% (many diffs)
28 mouse 64451 Dip2a disco interacting protein 2... NM_001081419.2 48.2% 50.2% (many diffs)
29 mouse 64451 Dip2a disco interacting protein 2... XM_006513939.3 47.9% 49.9% (many diffs)
30 mouse 64451 Dip2a disco interacting protein 2... XM_006513940.3 45.9% 48.1% (many diffs)
31 mouse 64451 Dip2a disco interacting protein 2... XM_006513941.3 43.4% 45.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2733
ORF length:
2667
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TGACCGCGGG TGCCCGCTGG AGGCGGCGCC GCTGCCTGCC GAGGTGCGGG
121AGAGCCTGGC TGAGCTGGAG CTGGAGCTGT CGGAAGGTGA CATCACTCAA AAAGGATATG
181AAAAGAAAAG GGCAAAGCTG CTTGCACGTT ATATACCGCT TATTCAAGGA ATAGACCCGT
241CTCTGCAAGC AGAGAATAGA ATTCCTGGGC CCTCACAAAC CACGGCCGCT GCACCCAAGC
301AGCAGAAGTC TCGGCCCACC GCCTCGGGGG ATGAGCGCTT CCGGTCAGAT GTCCACACTG
361AAGCCGTGCA AGCAGCTTTG GCCAAATACA AAGAGAGGAA GATGCCTATG CCTTCGAAGA
421GACGTTCTGT CCTTGTGCAT TCGTCTGTGG AAACCTACAC CCCTCCAGAC ACGTCGTCTG
481CCTCAGAAGA TGAGGGCTCT TTACGGCGAC CCGGGCGACT CACCTCCACT CCGCTCCAGA
541GCCATTCCAG CGTCGAGCCC TGGCTCGACC GGGTCATTCA GGGCTCGTCC ACCTCATCCT
601CTGCATCCTC CACCTCATCT CACCCGGGAG GGAGACCCAC CACTGCTCCC AGTGCTGCAG
661CCACGCCGGG GGCCGCCGCT ACCACTGCAC TCGCAGGCCT CGAGGCCCAC ACCCACATAG
721ATCTGCATTC TGCCCCTCCT GATGTCACCA CGGGCCTCGT GGAGCATTCG TACTTTGAGC
781GTCCACAGGT GGCTTCTGTG AGAAGTGTTC CTCGGGGGTG CAGCGGGAGC ATGCTGGAAA
841CAGCAGATGG TGTCCCTGTG AACAGCAGAG TGTCCTCCAA AATCCAGCAG CTTCTGAACA
901CCCTGAAGAG GCCAAAGCGC CCTCCACTGA AGGAGTTCTT TGTGGATGAT TTTGAGGAAT
961TGTTGGAAGT TCAGCAACCA GATCCAAATC AGCCAAAGCC TGAGGGAAGC GAGACGAGTG
1021TGCTGAGAGG GGAGCCTCTC ACTGCAGGTG TCCCCCGACC GCCGTCGCTG TTGGCCACCT
1081TGCAGCGCTG GGGCACAACA CAGCCCAAAT CCCCCTGTCT GACTGCCTTG GATACAACTG
1141GGAAAGCCGT CTACACTCTC ACCTATGGTA AACTTTGGAG TCGGAGTTTA AAACTAGCTT
1201ATACTCTACT TAATAAACTG ACAAGTAAGA ATGAACCTCT ACTTAAACCT GGAGACAGAG
1261TGGCGCTCGT GTTTCCGAAT AGTGACCCTG TGATGTTCAT GGTTGCATTT TATGGGTGTC
1321TCCTGGCAGA GCTGGTTCCT GTCCCCATAG AAGTGCCATT AACAAGAAAG GATGCAGGCA
1381GCCAGCAGGT TGGGTTTCTG CTGGGCAGCT GTGGAGTCTT CTTGGCCCTG ACCACAGACG
1441CTTGTCAGAA AGGCCTCCCC AAGGCACAGA CAGGAGAGGT GGCAGCTTTC AAAGGTTGGC
1501CCCCGCTCTC CTGGCTAGTG ATTGATGGGA AGCATCTAGC CAAGCCCCCA AAGGACTGGC
1561ACCCTCTGGC CCAGGACACA GGGACTGGGA CTGCCTACAT TGAGTATAAA ACCAGCAAAG
1621AAGGCAGTAC GGTGGGGGTC ACAGTGTCCC ACGCATCCCT GCTGGCACAG TGCCGGGCTC
1681TGACCCAGGC GTGCGGGTAC TCAGAAGCTG AAACATTAAC AAACGTGCTG GATTTCAAAA
1741GGGATGCTGG TCTGTGGCAT GGCGTGTTAA CAAGCGTCAT GAACAGGATG CACGTGGTCA
1801GCGTCCCCTA CGCGCTGATG AAGGCGAACC CACTCTCCTG GATCCAGAAA GTGTGCTTCT
1861ATAAAGCTCG GGCCGCGCTG GTGAAGTCGC GAGACATGCA CTGGTCTCTC CTAGCTCAGC
1921GGGGCCAGAG GGACGTCAGC CTCAGCTCAC TGCGCATGCT GATTGTGGCC GATGGTGCCA
1981ACCCGTGGTC GATCTCCTCC TGTGACGCCT TCCTCAACGT CTTCCAGTCC AGAGGTCTGA
2041GGCCAGAGGT CATCTGTCCT TGTGCAAGTT CTCCTGAGGC GCTGACTGTC GCCATCCGCA
2101GGCCACCTGA TCTGGGAGGA CCACCTCCAA GAAAAGCAGT CCTATCGATG AACGGTCTAA
2161GTTATGGTGT TATCAGAGTG GATACTGAAG AAAAGTTGTC AGTCCTTACT GTTCAGGACG
2221TTGGTCAGGT GATGCCTGGA GCTAATGTAT GTGTTGTGAA GTTAGAAGGT ACCCCTTATC
2281TTTGTAAAAC TGATGAAGTG GGAGAAATAT GCGTCAGTTC CAGTGCAACT GGCACAGCGT
2341ACTATGGATT GCTTGGAATC ACGAAGAATG TGTTTGAGGC AGTTCCGGTC ACCACAGGAG
2401GAGCACCCAT CTTTGACAGG CCATTCACCA GGACAGGCCT GCTGGGCTTC ATCGGGCCTG
2461ACAACCTGGT CTTCATCGTG GGCAAACTGG ACGGGCTGAT GGTCACTGGA GTTCGCAGAC
2521ACAATGCAGA TGACGTTGTG GCCACCGCAC TGGCCGTGGA GCCCATGAAG TTTGTCTACA
2581GAGGCAGGAT CGCTGTGTTC TCTGTGACCG TGCTGCACGA CGACCGGATT GTCCTGGTGG
2641CTGAGCAGCG GCCGGATGCC TCGGAGGAGG ACAGCTTCCA GTGGATGAGC CGTGTGCTGC
2701AGGTGGGCGC CCCGGCACGG CCTATGGTTC GGTGCCCAAC TTTCTTGTAC AAAGTtggca
2761ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)