Construct: ORF ccsbBroadEn_07848
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007245.1_s300c1, BRDN0000385441
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DIP2A (23181)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23181 | DIP2A | disco interacting protein 2... | NM_206889.3 | 99.8% | 99.8% | 174A>G;262A>G;2079G>A |
| 2 | human | 23181 | DIP2A | disco interacting protein 2... | NM_206890.3 | 94.4% | 94.4% | (many diffs) |
| 3 | human | 23181 | DIP2A | disco interacting protein 2... | XM_011529502.1 | 91.2% | 90.7% | (many diffs) |
| 4 | human | 23181 | DIP2A | disco interacting protein 2... | XM_017028305.1 | 91.2% | 90.7% | (many diffs) |
| 5 | human | 23181 | DIP2A | disco interacting protein 2... | NM_206891.3 | 90.5% | 89.9% | (many diffs) |
| 6 | human | 23181 | DIP2A | disco interacting protein 2... | NM_001146115.2 | 89.6% | 89.6% | (many diffs) |
| 7 | human | 23181 | DIP2A | disco interacting protein 2... | NM_001353944.2 | 85.1% | 85% | (many diffs) |
| 8 | human | 23181 | DIP2A | disco interacting protein 2... | XM_011529501.1 | 73.2% | 72.8% | (many diffs) |
| 9 | human | 23181 | DIP2A | disco interacting protein 2... | XM_017028304.1 | 64.1% | 63.8% | (many diffs) |
| 10 | human | 23181 | DIP2A | disco interacting protein 2... | XM_017028303.1 | 59.9% | 59.6% | (many diffs) |
| 11 | human | 23181 | DIP2A | disco interacting protein 2... | XM_017028301.1 | 59.4% | 59.1% | (many diffs) |
| 12 | human | 23181 | DIP2A | disco interacting protein 2... | XM_017028300.1 | 58.5% | 58.2% | (many diffs) |
| 13 | human | 23181 | DIP2A | disco interacting protein 2... | NM_001353943.1 | 56.4% | 56.1% | (many diffs) |
| 14 | human | 23181 | DIP2A | disco interacting protein 2... | NM_015151.4 | 56.4% | 56.1% | (many diffs) |
| 15 | human | 23181 | DIP2A | disco interacting protein 2... | XM_017028295.2 | 56.4% | 56.1% | (many diffs) |
| 16 | human | 23181 | DIP2A | disco interacting protein 2... | NM_001353942.1 | 56.3% | 56.1% | (many diffs) |
| 17 | human | 23181 | DIP2A | disco interacting protein 2... | XM_017028294.2 | 56.3% | 56.1% | (many diffs) |
| 18 | human | 23181 | DIP2A | disco interacting protein 2... | NM_001146116.1 | 56.1% | 55.8% | (many diffs) |
| 19 | human | 23181 | DIP2A | disco interacting protein 2... | XM_017028293.1 | 55.1% | 54.9% | (many diffs) |
| 20 | human | 23181 | DIP2A | disco interacting protein 2... | XM_011529492.2 | 55.1% | 54.8% | (many diffs) |
| 21 | human | 23181 | DIP2A | disco interacting protein 2... | XM_017028291.1 | 55.1% | 54.8% | (many diffs) |
| 22 | human | 23181 | DIP2A | disco interacting protein 2... | XM_017028292.1 | 55.1% | 54.8% | (many diffs) |
| 23 | human | 23181 | DIP2A | disco interacting protein 2... | XM_017028298.2 | 53.6% | 53.4% | (many diffs) |
| 24 | human | 23181 | DIP2A | disco interacting protein 2... | XM_017028297.1 | 52.5% | 52.2% | (many diffs) |
| 25 | human | 23181 | DIP2A | disco interacting protein 2... | XM_017028302.2 | 51% | 50.7% | (many diffs) |
| 26 | human | 23181 | DIP2A | disco interacting protein 2... | XM_017028299.1 | 49.9% | 49.6% | (many diffs) |
| 27 | mouse | 64451 | Dip2a | disco interacting protein 2... | XR_001779571.1 | 78.3% | (many diffs) | |
| 28 | mouse | 64451 | Dip2a | disco interacting protein 2... | NM_001081419.2 | 48.2% | 50.2% | (many diffs) |
| 29 | mouse | 64451 | Dip2a | disco interacting protein 2... | XM_006513939.3 | 47.9% | 49.9% | (many diffs) |
| 30 | mouse | 64451 | Dip2a | disco interacting protein 2... | XM_006513940.3 | 45.9% | 48.1% | (many diffs) |
| 31 | mouse | 64451 | Dip2a | disco interacting protein 2... | XM_006513941.3 | 43.4% | 45.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2733
- ORF length:
- 2667
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TGACCGCGGG TGCCCGCTGG AGGCGGCGCC GCTGCCTGCC GAGGTGCGGG 121 AGAGCCTGGC TGAGCTGGAG CTGGAGCTGT CGGAAGGTGA CATCACTCAA AAAGGATATG 181 AAAAGAAAAG GGCAAAGCTG CTTGCACGTT ATATACCGCT TATTCAAGGA ATAGACCCGT 241 CTCTGCAAGC AGAGAATAGA ATTCCTGGGC CCTCACAAAC CACGGCCGCT GCACCCAAGC 301 AGCAGAAGTC TCGGCCCACC GCCTCGGGGG ATGAGCGCTT CCGGTCAGAT GTCCACACTG 361 AAGCCGTGCA AGCAGCTTTG GCCAAATACA AAGAGAGGAA GATGCCTATG CCTTCGAAGA 421 GACGTTCTGT CCTTGTGCAT TCGTCTGTGG AAACCTACAC CCCTCCAGAC ACGTCGTCTG 481 CCTCAGAAGA TGAGGGCTCT TTACGGCGAC CCGGGCGACT CACCTCCACT CCGCTCCAGA 541 GCCATTCCAG CGTCGAGCCC TGGCTCGACC GGGTCATTCA GGGCTCGTCC ACCTCATCCT 601 CTGCATCCTC CACCTCATCT CACCCGGGAG GGAGACCCAC CACTGCTCCC AGTGCTGCAG 661 CCACGCCGGG GGCCGCCGCT ACCACTGCAC TCGCAGGCCT CGAGGCCCAC ACCCACATAG 721 ATCTGCATTC TGCCCCTCCT GATGTCACCA CGGGCCTCGT GGAGCATTCG TACTTTGAGC 781 GTCCACAGGT GGCTTCTGTG AGAAGTGTTC CTCGGGGGTG CAGCGGGAGC ATGCTGGAAA 841 CAGCAGATGG TGTCCCTGTG AACAGCAGAG TGTCCTCCAA AATCCAGCAG CTTCTGAACA 901 CCCTGAAGAG GCCAAAGCGC CCTCCACTGA AGGAGTTCTT TGTGGATGAT TTTGAGGAAT 961 TGTTGGAAGT TCAGCAACCA GATCCAAATC AGCCAAAGCC TGAGGGAAGC GAGACGAGTG 1021 TGCTGAGAGG GGAGCCTCTC ACTGCAGGTG TCCCCCGACC GCCGTCGCTG TTGGCCACCT 1081 TGCAGCGCTG GGGCACAACA CAGCCCAAAT CCCCCTGTCT GACTGCCTTG GATACAACTG 1141 GGAAAGCCGT CTACACTCTC ACCTATGGTA AACTTTGGAG TCGGAGTTTA AAACTAGCTT 1201 ATACTCTACT TAATAAACTG ACAAGTAAGA ATGAACCTCT ACTTAAACCT GGAGACAGAG 1261 TGGCGCTCGT GTTTCCGAAT AGTGACCCTG TGATGTTCAT GGTTGCATTT TATGGGTGTC 1321 TCCTGGCAGA GCTGGTTCCT GTCCCCATAG AAGTGCCATT AACAAGAAAG GATGCAGGCA 1381 GCCAGCAGGT TGGGTTTCTG CTGGGCAGCT GTGGAGTCTT CTTGGCCCTG ACCACAGACG 1441 CTTGTCAGAA AGGCCTCCCC AAGGCACAGA CAGGAGAGGT GGCAGCTTTC AAAGGTTGGC 1501 CCCCGCTCTC CTGGCTAGTG ATTGATGGGA AGCATCTAGC CAAGCCCCCA AAGGACTGGC 1561 ACCCTCTGGC CCAGGACACA GGGACTGGGA CTGCCTACAT TGAGTATAAA ACCAGCAAAG 1621 AAGGCAGTAC GGTGGGGGTC ACAGTGTCCC ACGCATCCCT GCTGGCACAG TGCCGGGCTC 1681 TGACCCAGGC GTGCGGGTAC TCAGAAGCTG AAACATTAAC AAACGTGCTG GATTTCAAAA 1741 GGGATGCTGG TCTGTGGCAT GGCGTGTTAA CAAGCGTCAT GAACAGGATG CACGTGGTCA 1801 GCGTCCCCTA CGCGCTGATG AAGGCGAACC CACTCTCCTG GATCCAGAAA GTGTGCTTCT 1861 ATAAAGCTCG GGCCGCGCTG GTGAAGTCGC GAGACATGCA CTGGTCTCTC CTAGCTCAGC 1921 GGGGCCAGAG GGACGTCAGC CTCAGCTCAC TGCGCATGCT GATTGTGGCC GATGGTGCCA 1981 ACCCGTGGTC GATCTCCTCC TGTGACGCCT TCCTCAACGT CTTCCAGTCC AGAGGTCTGA 2041 GGCCAGAGGT CATCTGTCCT TGTGCAAGTT CTCCTGAGGC GCTGACTGTC GCCATCCGCA 2101 GGCCACCTGA TCTGGGAGGA CCACCTCCAA GAAAAGCAGT CCTATCGATG AACGGTCTAA 2161 GTTATGGTGT TATCAGAGTG GATACTGAAG AAAAGTTGTC AGTCCTTACT GTTCAGGACG 2221 TTGGTCAGGT GATGCCTGGA GCTAATGTAT GTGTTGTGAA GTTAGAAGGT ACCCCTTATC 2281 TTTGTAAAAC TGATGAAGTG GGAGAAATAT GCGTCAGTTC CAGTGCAACT GGCACAGCGT 2341 ACTATGGATT GCTTGGAATC ACGAAGAATG TGTTTGAGGC AGTTCCGGTC ACCACAGGAG 2401 GAGCACCCAT CTTTGACAGG CCATTCACCA GGACAGGCCT GCTGGGCTTC ATCGGGCCTG 2461 ACAACCTGGT CTTCATCGTG GGCAAACTGG ACGGGCTGAT GGTCACTGGA GTTCGCAGAC 2521 ACAATGCAGA TGACGTTGTG GCCACCGCAC TGGCCGTGGA GCCCATGAAG TTTGTCTACA 2581 GAGGCAGGAT CGCTGTGTTC TCTGTGACCG TGCTGCACGA CGACCGGATT GTCCTGGTGG 2641 CTGAGCAGCG GCCGGATGCC TCGGAGGAGG ACAGCTTCCA GTGGATGAGC CGTGTGCTGC 2701 AGGTGGGCGC CCCGGCACGG CCTATGGTTC GGTGCCCAAC TTTCTTGTAC AAAGTtggca 2761 ttataagaaa gcattgctta tcaatttgtt gcaacgaac