Construct: ORF ccsbBroadEn_07981
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009601.1_s300c1, BRDN0000456806
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SENP6 (26054)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26054 | SENP6 | SUMO specific peptidase 6 | NM_001100409.3 | 99.9% | 100% | 606A>G |
| 2 | human | 26054 | SENP6 | SUMO specific peptidase 6 | XM_017010719.2 | 99.4% | 99.4% | 455_472del;624A>G |
| 3 | human | 26054 | SENP6 | SUMO specific peptidase 6 | NM_015571.4 | 99.3% | 99.3% | 455_475del;627A>G |
| 4 | human | 26054 | SENP6 | SUMO specific peptidase 6 | XM_024446400.1 | 96.9% | 91.7% | (many diffs) |
| 5 | human | 26054 | SENP6 | SUMO specific peptidase 6 | XM_011535746.2 | 96.4% | 95.2% | (many diffs) |
| 6 | human | 26054 | SENP6 | SUMO specific peptidase 6 | XM_006715457.4 | 94.2% | 93.4% | (many diffs) |
| 7 | human | 26054 | SENP6 | SUMO specific peptidase 6 | XM_017010721.1 | 94.2% | 93.4% | (many diffs) |
| 8 | human | 26054 | SENP6 | SUMO specific peptidase 6 | XM_017010725.2 | 90.1% | 90.1% | 0_1ins327;279A>G |
| 9 | human | 26054 | SENP6 | SUMO specific peptidase 6 | XM_011535747.3 | 89.6% | 89.6% | 0_1ins327;128_145del;297A>G |
| 10 | human | 26054 | SENP6 | SUMO specific peptidase 6 | XM_017010723.2 | 89.6% | 89.6% | 0_1ins327;128_145del;297A>G |
| 11 | human | 26054 | SENP6 | SUMO specific peptidase 6 | XM_017010724.2 | 89.6% | 89.6% | 0_1ins327;128_145del;297A>G |
| 12 | human | 26054 | SENP6 | SUMO specific peptidase 6 | NM_001304792.1 | 61.9% | 61.9% | 606A>G;2055_2055delGins1261 |
| 13 | human | 26054 | SENP6 | SUMO specific peptidase 6 | XR_001743330.2 | 51.4% | (many diffs) | |
| 14 | human | 26054 | SENP6 | SUMO specific peptidase 6 | XR_241847.4 | 51.4% | (many diffs) | |
| 15 | human | 26054 | SENP6 | SUMO specific peptidase 6 | XR_001743331.2 | 49.7% | (many diffs) | |
| 16 | mouse | 215351 | Senp6 | SUMO/sentrin specific pepti... | NM_146003.2 | 81.8% | 78.8% | (many diffs) |
| 17 | mouse | 215351 | Senp6 | SUMO/sentrin specific pepti... | NM_001311110.1 | 81.4% | 78.3% | (many diffs) |
| 18 | mouse | 215351 | Senp6 | SUMO/sentrin specific pepti... | XM_006511017.3 | 73.2% | 69.6% | (many diffs) |
| 19 | mouse | 215351 | Senp6 | SUMO/sentrin specific pepti... | XM_006511014.1 | 73% | 70.1% | (many diffs) |
| 20 | mouse | 215351 | Senp6 | SUMO/sentrin specific pepti... | XM_006511015.3 | 73% | 70.1% | (many diffs) |
| 21 | mouse | 215351 | Senp6 | SUMO/sentrin specific pepti... | XM_006511016.3 | 72.7% | 69.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 3381
- ORF length:
- 3315
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGCCGGCAAG AGCGGCGGTA GCGCAGGGGA GATTACTTTT CTGGAAGCTT 121 TGGCTAGATC AGAGTCTAAG AGAGATGGAG GTTTTAAAAA TAATTGGAGC TTTGATCATG 181 AAGAAGAAAG TGAAGGAGAT ACAGATAAAG ATGGGACAAA TCTGCTCAGT GTGGATGAAG 241 ATGAGGATTC TGAAACCTCA AAAGGAAAAA AGTTAAATCG TCGATCTGAA ATTGTTGCTA 301 ATAGCTCTGG TGAATTCATC TTGAAGACAT ATGTAAGACG AAACAAGTCT GAAAGTTTTA 361 AAACTTTGAA AGGCAACCCA ATTGGACTTA ACATGTTGAG CAACAATAAG AAATTGAGTG 421 AAAATACGCA AAATACGTCA TTATGTTCTG GAACTGTAGT TCATGGTAGA CGTTTTCATC 481 ATGCTCATGC ACAGATACCA GTAGTAAAAA CAGCAGCCCA AAGGAAAGAA TACCCACCTC 541 ATGTCCAAAA AGTTGAAATT AATCCTGTAA GGTTAAGTCG GCTCCAAGGT GTTGAACGTA 601 TAATGAAGAA AACAGAAGAG TCCGAATCAC AAGTGGAGCC TGAAATTAAG AGGAAAGTAC 661 AACAGAAACG GCACTGTAGT ACCTATCAGC CTACTCCTCC TCTATCTCCT GCTTCAAAAA 721 AATGTTTAAC CCATTTAGAG GATTTGCAAA GAAATTGCAG ACAAGCTATT ACTTTGAATG 781 AGTCTACTGG ACCATTATTA AGAACGTCAA TTCATCAGAA TTCTGGAGGA CAGAAGTCAC 841 AAAACACAGG ATTAACAACC AAGAAGTTTT ATGGCAACAA TGTGGAAAAG GTTCCAATTG 901 ATATTATTGT GAATTGTGAT GACAGTAAAC ACACTTATTT ACAGACTAAT GGAAAAGTCA 961 TTTTACCTGG GGCAAAAATA CCCAAAATCA CAAACTTGAA AGAAAGGAAA ACAAGTTTGT 1021 CAGACCTAAA TGATCCAATC ATTTTGTCCA GTGATGATGA TGATGACAAC GACAGAACTA 1081 ACAGAAGAGA AAGCATATCT CCTCAGCCTG CTGATTCAGC ATGTTCTTCC CCTGCACCAT 1141 CCACTGGAAA AGTAGAAGCA GCGCTAAATG AAAATACTTG CAGAGCAGAG CGTGAACTAC 1201 GAAGCATTCC AGAAGACTCA GAGTTAAATA CAGTTACATT GCCAAGAAAA GCAAGAATGA 1261 AAGACCAGTT TGGCAATTCT ATTATCAACA CACCTCTGAA ACGTCGTAAA GTGTTTTCTC 1321 AAGAACCTCC AGATGCTTTA GCTTTAAGCT GCCAAAGTTC CTTTGACAGT GTCATTTTAA 1381 ACTGTCGAAG TATACGAGTA GGAACACTCT TCCGGCTGTT AATAGAGCCT GTAATTTTTT 1441 GTTTAGATTT TATCAAGATA CAGCTAGACG AACCAGACCA TGATCCTGTA GAGATTATAT 1501 TAAATACCTC TGATCTAACT AAATGTGAAT GGTGTAATGT CCGAAAATTA CCTGTAGTGT 1561 TTCTTCAAGC AATTCCAGCA GTTTATCAAA AGCTGAGCAT CCAACTGCAA ATGAATAAGG 1621 AGGATAAAGT TTGGAATGAT TGTAAAGGAG TAAATAAATT AACAAATTTA GAAGAACAAT 1681 ATATAATTTT AATTTTTCAA AATGGCCTTG ATCCTCCGGC AAATATGGTA TTTGAAAGTA 1741 TCATTAATGA AATTGGTATA AAGAATAACA TCTCCAATTT TTTTGCGAAA ATTCCCTTTG 1801 AAGAAGCTAA TGGCAGACTT GTTGCCTGTA CAAGAACCTA TGAAGAGAGC ATCAAAGGAA 1861 GTTGTGGGCA AAAGGAAAAC AAAATTAAAA CTGTATCATT TGAATCTAAA ATACAACTTA 1921 GAAGCAAACA AGAATTTCAG TTTTTTGATG AAGAAGAAGA AACTGGAGAA AACCACACCA 1981 TCTTCATTGG CCCAGTAGAA AAGTTGATAG TATATCCACC ACCTCCAGCT AAGGGAGGCA 2041 TCTCTGTTAC CAATGAGGAC CTGCACTGTC TAAATGAAGG AGAATTTTTA AATGATGTTA 2101 TTATAGACTT TTATTTGAAA TACTTGGTGC TTGAAAAACT GAAGAAGGAA GACGCTGACC 2161 GAATTCATAT ATTCAGTTCT TTTTTCTATA AACGCCTTAA TCAGAGAGAG AGGAGAAATC 2221 ATGAAACAAC TAATCTGTCA ATACAGCAAA AACGGCATGG GAGAGTAAAA ACATGGACCC 2281 GGCACGTAGA TATTTTTGAG AAGGATTTTA TTTTTGTACC CCTTAATGAA GCTGCACACT 2341 GGTTTTTGGC TGTTGTTTGT TTCCCCGGTT TGGAAAAACC AAAGTATGAA CCTAATCCTC 2401 ATTACCATGA AAATGCTGTC ATACAGAAAT GTTCAACTGT AGAGGACAGT TGTATTTCTT 2461 CTTCAGCCAG TGAAATGGAG AGTTGTTCAC AAAACTCTTC TGCCAAGCCT GTAATTAAGA 2521 AGATGCTAAA CAAAAAACAT TGCATAGCTG TAATTGATTC CAATCCTGGG CAGGAAGAAA 2581 GTGACCCTCG TTATAAGAGA AACATATGCA GTGTAAAATA CAGTGTGAAA AAAATAAATC 2641 ATACTGCGAG TGAAAATGAA GAATTCAATA AAGGAGAATC TACATCCCAG AAAGTTGCTG 2701 ATAGGACTAA AAGTGAGAAT GGCCTACAGA ATGAAAGTTT AAGTTCCACA CATCATACAG 2761 ATGGCTTAAG CAAAATCAGA CTAAACTATA GCGATGAATC ACCTGAAGCT GGTAAAATGC 2821 TTGAAGATGA ACTCGTCGAC TTCTCAGAAG ATCAGGATAA CCAGGATGAT AGCAGTGACG 2881 ATGGATTCCT CGCTGATGAC AACTGCAGTT CAGAAATAGG ACAGTGGCAT TTAAAGCCTA 2941 CTATCTGTAA ACAACCTTGT ATCCTACTTA TGGACTCACT CCGAGGCCCT TCTCGGTCAA 3001 ATGTTGTCAA AATTTTAAGA GAGTATTTAG AAGTGGAATG GGAAGTTAAA AAAGGAAGCA 3061 AAAGAAGTTT TTCCAAAGAT GTTATGAAGG GCTCTAATCC AAAAGTACCA CAGCAAAACA 3121 ACTTCAGTGA CTGTGGTGTA TATGTATTGC AGTATGTAGA GAGCTTTTTT GAGAATCCAA 3181 TTCTCAGTTT TGAACTACCT ATGAATTTGG CAAACTGGTT TCCTCCACCA AGAATGAGAA 3241 CAAAAAGAGA AGAAATCCGA AACATAATTC TGAAGCTACA GGAAGATCAG AGCAAAGAGA 3301 AAAGAAAGCA TAAGGACACT TACTCAACAG AAGCACCTTT AGGCGAAGGA ACAGAACAAT 3361 ATGTCAATAG TATCTCAGAT TGCCCAACTT TCTTGTACAA AGTTGGcatt ataagaaagc 3421 attgcttatc aatttgttgc aacgaac