Transcript: Human XM_006715457.4

PREDICTED: Homo sapiens SUMO specific peptidase 6 (SENP6), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SENP6 (26054)
Length:
5723
CDS:
923..4093

Additional Resources:

NCBI RefSeq record:
XM_006715457.4
NBCI Gene record:
SENP6 (26054)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006715457.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000010850 TCGATCTGAAATTGTTGCTAA pLKO.1 970 CDS 100% 4.950 6.930 N SENP6 n/a
2 TRCN0000004104 CACAGGATTAACAACCAAGAA pLKO.1 1555 CDS 100% 4.950 3.960 N SENP6 n/a
3 TRCN0000272838 CACAGGATTAACAACCAAGAA pLKO_005 1555 CDS 100% 4.950 3.960 N SENP6 n/a
4 TRCN0000272788 CCTTGATCCTCCGGCAAATAT pLKO_005 2416 CDS 100% 15.000 10.500 N SENP6 n/a
5 TRCN0000272790 CTCAGTGGGTGTGACATATTT pLKO_005 4447 3UTR 100% 15.000 10.500 N SENP6 n/a
6 TRCN0000272839 TGAGTCTACTGGACCATTATT pLKO_005 1489 CDS 100% 15.000 10.500 N SENP6 n/a
7 TRCN0000004102 CCGTGTTACCTTTCTCTATTA pLKO.1 4843 3UTR 100% 13.200 9.240 N SENP6 n/a
8 TRCN0000004105 CTACAGGAAGATCAGAGCAAA pLKO.1 3986 CDS 100% 4.950 3.465 N SENP6 n/a
9 TRCN0000272789 CTACAGGAAGATCAGAGCAAA pLKO_005 3986 CDS 100% 4.950 3.465 N SENP6 n/a
10 TRCN0000004103 GACAGAACTAACAGAAGAGAA pLKO.1 1781 CDS 100% 4.950 3.465 N SENP6 n/a
11 TRCN0000293608 GACAGAACTAACAGAAGAGAA pLKO_005 1781 CDS 100% 4.950 3.465 N SENP6 n/a
12 TRCN0000031019 CCCTTAATGAAGCTGCACATT pLKO.1 3030 CDS 100% 4.950 3.465 N Senp6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006715457.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07981 pDONR223 100% 94.2% 93.4% None (many diffs) n/a
2 ccsbBroad304_07981 pLX_304 0% 94.2% 93.4% V5 (many diffs) n/a
3 TRCN0000481041 CCACACCTATCACGACGTGAGGGG pLX_317 11.9% 94.2% 93.4% V5 (many diffs) n/a
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