Construct: ORF ccsbBroadEn_08409
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006784.1_s300c1, BRDN0000456961
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CNNM2 (54805)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 54805 | CNNM2 | cyclin and CBS domain dival... | NM_199077.2 | 99.9% | 99.8% | 233G>T |
| 2 | human | 54805 | CNNM2 | cyclin and CBS domain dival... | XM_006717908.2 | 97.6% | 96.4% | (many diffs) |
| 3 | human | 54805 | CNNM2 | cyclin and CBS domain dival... | XM_005269933.4 | 96.7% | 95.9% | (many diffs) |
| 4 | human | 54805 | CNNM2 | cyclin and CBS domain dival... | XM_011539911.3 | 96.7% | 95.9% | (many diffs) |
| 5 | human | 54805 | CNNM2 | cyclin and CBS domain dival... | XR_001747120.1 | 66.5% | (many diffs) | |
| 6 | human | 54805 | CNNM2 | cyclin and CBS domain dival... | NM_199076.3 | 64.1% | 62.7% | (many diffs) |
| 7 | human | 54805 | CNNM2 | cyclin and CBS domain dival... | NM_017649.5 | 62.5% | 61.1% | (many diffs) |
| 8 | human | 54805 | CNNM2 | cyclin and CBS domain dival... | XR_945782.3 | 55.4% | (many diffs) | |
| 9 | human | 54805 | CNNM2 | cyclin and CBS domain dival... | XR_001747119.2 | 45.5% | (many diffs) | |
| 10 | human | 54805 | CNNM2 | cyclin and CBS domain dival... | XR_001747121.1 | 12.7% | (many diffs) | |
| 11 | human | 54805 | CNNM2 | cyclin and CBS domain dival... | XR_001747118.1 | 12.7% | (many diffs) | |
| 12 | mouse | 94219 | Cnnm2 | cyclin M2 | XM_006527490.3 | 91.1% | 95.8% | (many diffs) |
| 13 | mouse | 94219 | Cnnm2 | cyclin M2 | XM_006527489.3 | 80% | 82% | (many diffs) |
| 14 | mouse | 94219 | Cnnm2 | cyclin M2 | NM_001102471.1 | 59.7% | 61.4% | (many diffs) |
| 15 | mouse | 94219 | Cnnm2 | cyclin M2 | NM_033569.3 | 58.2% | 59.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1725
- ORF length:
- 1656
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GATTGGCTGT GGCGCTTGTG AACCCAAAGT AAAGATGGCG GGCGGGCAGG 121 CAGCCGCCGC ACTGCCCACT TGGAAGATGG CGGCGCGCCG CAGCCTCAGC GCTCGCGGCC 181 GGGGGATCCT GCAGGCGGCT GCGGGGCGGC TGCTGCCGCT GCTCCTGCTG AGCTGCTGCT 241 GCGGTGCGGG CGGCTGCGCA GCGGTGGGCG AGAATGAGGA GACGGTGATC ATCGGGCTGC 301 TACTGGAGGA CACGAACGAC GTGTCGTTCA TGGAAGGGGG GGCGCTGCGG GTGAGCGAAC 361 GGACCCGGGT CAAGCTGCGG GTGTACGGGC AGAACATCAA TAACGAGACG TGGTCCCGCA 421 TCGCCTTCAC CGAGCACGAG CGGCGGCGCC ACAGCCCGGG GGAGCGCGGG CTGGGGGGCC 481 CCGCGCCGCC AGAGCCGGAC AGCGGCCCCC AGCGATGCGG CATCCGCACC TCAGACATCA 541 TCATCTTGCC CCACATCATT CTCAACCGCC GCACCTCGGG CATCATCGAG ATCGAGATCA 601 AACCGCTACG CAAGATGGAG AAGAGCAAGT CCTATTACCT GTGCACGTCG CTCTCCACGC 661 CCGCCCTGGG CGCCGGCGGC TCGGGGTCCA CGGGTGGCGC CGTCGGGGGC AAGGGTGGCT 721 CGGGGGTGGC CGGGCTCCCG CCGCCCCCGT GGGCCGAGAC CACCTGGATT TACCACGACG 781 GCGAGGACAC CAAGATGATC GTAGGCGAAG AGAAGAAGTT CCTGCTGCCC TTCTGGCTGC 841 AGGTGATCTT CATTTCGCTG CTGCTGTGCC TGTCGGGCAT GTTCAGCGGC CTCAACCTGG 901 GGCTCATGGC CCTGGACCCG ATGGAGCTGC GCATCGTGCA GAACTGCGGC ACGGAGAAGG 961 AGAAGAATTA CGCCAAGCGC ATCGAGCCGG TGCGCAGGCA GGGCAACTAC CTGCTGTGCT 1021 CACTGCTGCT GGGCAACGTG CTGGTCAACA CCACGCTCAC CATCCTGCTC GACGACATCG 1081 CCGGCTCGGG CCTCGTGGCC GTGGTAGTCT CCACCATCGG TATCGTCATC TTCGGAGAGA 1141 TCGTGCCCCA GGCCATCTGC TCCCGGCATG GCCTGGCTGT GGGGGCCAAC ACCATCTTCC 1201 TCACCAAGTT TTTCATGATG ATGACCTTCC CCGCTTCCTA CCCGGTCAGC AAGCTGCTGG 1261 ACTGCGTCCT GGGCCAGGAG ATAGGCACCG TCTATAACCG GGAAAAACTG CTGGAGATGC 1321 TCCGGGTCAC CGATCCCTAC AACGACCTCG TTAAGGAGGA GCTGAACATC ATCCAAGGGG 1381 CGCTGGAGCT CCGCACCAAG ACGGTGGAGG ACGTGATGAC CCCACTCCGG GACTGCTTCA 1441 TGATCACCGG CGAAGCCATC CTGGACTTCA ACACCATGTC TGAGATCATG GAGAGCGGCT 1501 ACACCCGCAT TCCAGTGTTT GAAGGGGAGC GCTCCAATAT CGTGGACCTG CTGTTTGTCA 1561 AAGACTTGGC CTTCGTGGAT CCCGATGACT GTACCCCCCT GAAAACCATC ACCAAATTTT 1621 ATAACCACCC CTTGCACTTT GTTTTCAATG ACACCAAGTT GGACGCTATG CTGGAAGAAT 1681 TTAAGAAAGA ACACACAAAC AAGAAACCCA AATCATACCA ACACTTGCCA ACTTTCTTGT 1741 ACAAAGTTGG cattataaga aagcattgct tatcaatttg ttgcaacgaa c