Construct: ORF ccsbBroadEn_08565

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017606.1_s300c1, BRDN0000457358
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
YEATS2 (55689)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55689 YEATS2 YEATS domain containing 2 NM_001351369.1 99.9% 99.8% 1786G>T;1912G>T;3747C>T
2 human 55689 YEATS2 YEATS domain containing 2 NM_018023.5 99.9% 99.8% 1786G>T;1912G>T;3747C>T
3 human 55689 YEATS2 YEATS domain containing 2 XM_017006810.1 99.9% 99.8% 1786G>T;1912G>T;3747C>T
4 human 55689 YEATS2 YEATS domain containing 2 NM_001351370.1 99.8% 99.7% (many diffs)
5 human 55689 YEATS2 YEATS domain containing 2 XM_005247598.5 99.8% 99.7% (many diffs)
6 human 55689 YEATS2 YEATS domain containing 2 XM_006713688.3 99.8% 99.7% (many diffs)
7 human 55689 YEATS2 YEATS domain containing 2 XM_017006811.2 96.1% 96% (many diffs)
8 human 55689 YEATS2 YEATS domain containing 2 XM_011512965.1 96% 95.9% (many diffs)
9 human 55689 YEATS2 YEATS domain containing 2 NM_001351371.2 72.5% 72.4% (many diffs)
10 human 55689 YEATS2 YEATS domain containing 2 XM_011512966.1 72.5% 72.3% (many diffs)
11 human 55689 YEATS2 YEATS domain containing 2 XM_017006814.1 71% 71% (many diffs)
12 human 55689 YEATS2 YEATS domain containing 2 XM_024453638.1 71% 71% (many diffs)
13 human 55689 YEATS2 YEATS domain containing 2 XR_427369.3 64.1% (many diffs)
14 mouse 208146 Yeats2 YEATS domain containing 2 NM_001145930.1 84.2% 86.3% (many diffs)
15 mouse 208146 Yeats2 YEATS domain containing 2 XM_006521902.3 84.2% 86.3% (many diffs)
16 mouse 208146 Yeats2 YEATS domain containing 2 XM_006521903.3 84% 86.1% (many diffs)
17 mouse 208146 Yeats2 YEATS domain containing 2 XM_006521904.3 80.9% 82.3% (many diffs)
18 mouse 208146 Yeats2 YEATS domain containing 2 NM_001033237.2 80.7% 82.6% (many diffs)
19 mouse 208146 Yeats2 YEATS domain containing 2 XM_006521905.3 78.2% 80.6% (many diffs)
20 mouse 208146 Yeats2 YEATS domain containing 2 XR_384540.3 76.3% (many diffs)
21 mouse 208146 Yeats2 YEATS domain containing 2 XR_384537.3 67.7% (many diffs)
22 mouse 208146 Yeats2 YEATS domain containing 2 XR_384538.3 57.8% (many diffs)
23 mouse 208146 Yeats2 YEATS domain containing 2 XR_001781806.1 56.1% (many diffs)
24 mouse 208146 Yeats2 YEATS domain containing 2 XR_001781807.1 55.6% (many diffs)
25 mouse 208146 Yeats2 YEATS domain containing 2 NM_001145931.1 19.5% 20.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
4335
ORF length:
4266
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTCTGGAATC AAGCGAACCA TCAAAGAAAC CGACCCTGAT TACGAGGATG
121TATCTGTGGC CCTTCCAAAT AAGCGGCATA AAGCAATTGA GAATTCAGCT CGAGATGCTG
181CTGTGCAGAA GATTGAGACT ATTATCAAAG AACAGTTTGC TCTTGAAATG AAGAATAAGG
241AACATGAAAT TGAAGTCATT GACCAGCGAC TGATTGAAGC AAGAAGGATG ATGGATAAAC
301TGCGTGCCTG CATTGTAGCA AACTACTATG CTTCTGCAGG TCTTCTAAAA GTTTCTGAGG
361GATCAAAGAC ATGTGATACA ATGGTTTTTA ATCATCCTGC TATCAAGAAA TTTTTGGAAT
421CACCATCTAG GTCATCATCT CCTGCCAATC AGAGAGCAGA AACACCATCA GCCAATCATT
481CAGAAAGTGA TTCTTTATCT CAGCACAATG ACTTCTTATC TGACAAAGAT AATAACAGCA
541ATATGGATAT AGAGGAAAGA CTCTCAAACA ACATGGAGCA GAGACCAAGC CGAAATACTG
601GAAGGGATAC TTCTAGAATT ACTGGCTCCC ATAAAACAGA ACAGCGGAAT GCTGATCTCA
661CAGATGAGAC TTCACGACTT TTTGTAAAGA AAACAATAGT AGTGGGCAAT GTGTCCAAGT
721ATATACCTCC GGATAAGAGG GAAGAAAATG ACCAGTCAAC TCATAAGTGG ATGGTATATG
781TCCGAGGGTC CCGTAGAGAA CCCAGCATTA ATCATTTTGT CAAGAAGGTT TGGTTCTTCC
841TTCATCCTAG CTATAAACCA AATGACCTTG TGGAAGTTAG AGAGCCTCCT TTTCACCTGA
901CCAGAAGAGG CTGGGGTGAG TTTCCCGTCA GAGTTCAAGT TCATTTTAAG GACAGCCAGA
961ACAAGCGGAT AGATATCATA CATAATCTGA AGCTGGATAG AACTTATACT GGCTTGCAGA
1021CTCTTGGAGC AGAGACGGTA GTGGATGTTG AACTCCATCG CCATTCTCTC GGAGAAGACT
1081GTATCTATCC TCAGTCCTCG GAGTCTGACA TCTCTGATGC CCCTCCATCT TTGCCTTTGA
1141CCATTCCAGC CCCAGTGAAA GCTTCTTCAC CAATAAAGCA GTCACATGAG CCAGTACCCG
1201ATACCTCTGT GGAGAAAGGA TTCCCAGCTA GCACTGAAGC TGAACGACAC ACTCCGTTTT
1261ATGCTTTGCC ATCTTCATTG GAAAGAACAC CCACCAAAAT GACTACATCC CAGAAAGTTA
1321CCTTTTGTTC CCATGGCAAT TCAGCTTTCC AGCCAATAGC ATCAAGCTGC AAAATTGTTC
1381CACAAAGTCA GGTTCCTAAT CCTGAGTCAC CTGGAAAATC CTTCCAGCCC ATCACCATGA
1441GCTGCAAGAT TGTGTCAGGT TCCCCAATAT CAACTCCAAG CCCATCACCA TTGCCTCGAA
1501CCCCGACTTC CACTCCAGTC CACGTGAAGC AAGGCACTGC CGGCTCTGTT ATTAATAATC
1561CTTATGTTAT CATGGACAAG CAGCCGGGGC AGGTGATTGG AGCCACCACT CCCAGTACAG
1621GAAGTCCTAC AAACAAGATC TCCACGGCTT CTCAGGTCTC CCAAGGAACA GGTTCCCCTG
1681TTCCTAAAAT TCATGGAAGT AGTTTTGTAA CATCTACTGT CAAGCAGGAG GATTCTTTGT
1741TTGCATCTAT GCCACCTCTT TGCCCAATTG GGAGTCACCC TAAGGTTCAA AGCCCCAAAC
1801CTATAACAGG AGGACTTGGA GCTTTCACAA AAGTGATCAT CAAACAGGAA CCTTGTGAAG
1861CCCCTCACGT GCCCGCAACA GGAGCTGCCA GCCAGTCACC ACTCCCGCAG TATGTGACTG
1921TGAAAGGGGG TCACATGATA GCTGTGTCCC CTCAAAAACA GGTCATAACT CCTGGAGAAT
1981GGATTGCCCA GTCAGCAAAG GTTCAGCCCT CCAAGGTTGT CGGGGTACCA GTTGGGTCTG
2041CTTTACCTTC AACAGTGAAG CAGGCTGTGG CGATCAGTGG TGGCCAGATC CTGGTAGCCA
2101AGGCCAGCTC TTCTGTCTCC AAAGCAGTTG GGCCAAAGCA AGTTGTAACC CAAGGAGTTG
2161CCAAAGCAAT TGTGAGTGGA GGTGGAGGAA CCATTGTTGC TCAGCCAGTG CAGACCTTAA
2221CCAAGGCCCA GGTTACTGCC GCTGGTCCTC AGAAGAGTGG ATCCCAGGGT TCAGTAATGG
2281CAACGTTGCA GCTACCAGCC ACTAATTTGG CCAACTTGGC AAATTTGCCT CCTGGCACTA
2341AACTCTACCT AACTACAAAC AGCAAGAACC CTTCAGGAAA AGGAAAACTG CTGCTGATCC
2401CTCAAGGAGC CATCCTGCGA GCTACGAACA ATGCTAATCT CCAGTCTGGC TCAGCTGCCA
2461GTGGTGGGAG TGGTGCCGGA GGAGGAGGAG GAGGAGGAGG AGGAGGCGGC AGTGGCAGCG
2521GTGGAGGCGG CAGCACAGGA GGAGGAGGAG GAACAGCAGG AGGAGGAACT CAAAGTACTG
2581CTGGCCCTGG AGGGATATCT CAGCACCTGA CTTACACATC TTACATCCTC AAGCAAACTC
2641CCCAGGGCAC ATTTTTAGTT GGCCAGCCAT CACCCCAGAC TTCTGGAAAA CAACTCACCA
2701CTGGGTCAGT GGTCCAAGGA ACACTGGGAG TCAGCACATC TTCTGCACAA GGACAACAAA
2761CGCTAAAAGT CATCTCTGGA CAGAAAACCA CATTGTTTAC ACAGGCAGCC CATGGAGGAC
2821AGGCATCTCT AATGAAAATA TCCGATAGCA CCTTGAAGAC TGTGCCAGCC ACCTCACAGC
2881TCTCGAAGCC TGGAACCACA ATGCTGAGAG TAGCAGGAGG GGTTATCACA ACTGCCACTT
2941CCCCTGCCGT GGCCCTCTCA GCAAACGGTC CTGCACAACA GTCTGAAGGA ATGGCTCCCG
3001TGTCTTCATC TACGGTCAGT TCTGTAACGA AAACTTCTGG GCAGCAGCAA GTGTGTGTGA
3061GCCAGGCCAC CGTGGGAACC TGCAAGGCTG CCACCCCCAC CGTCGTCAGC GCCACGTCCC
3121TCGTGCCTAC ACCAAACCCC ATCTCTGGGA AAGCCACAGT ATCCGGACTG TTAAAGATTC
3181ACTCCAGTCA GTCCAGTCCG CAGCAGGCCG TCCTGACGAT TCCCAGCCAG CTCAAACCAC
3241TCAGCGTAAA CACATCTGGA GGGGTGCAGA CGATCCTGAT GCCTGTGAAT AAAGTGGTTC
3301AGTCATTTTC TACCAGCAAG CCACCTGCCA TTCTGCCTGT AGCTGCCCCA ACTCCAGTTG
3361TCCCCAGCTC TGCTCCAGCA GCTGTTGCAA AAGTGAAGAC TGAACCAGAA ACACCTGGAC
3421CGAGTTGCCT CTCTCAGGAG GGTCAGACAG CAGTGAAAAC AGAAGAAAGT TCTGAGCTGG
3481GAAACTATGT CATTAAGATA GACCATTTAG AAACTATCCA GCAACTCCTA ACTGCAGTAG
3541TAAAGAAGAT TCCATTAATC ACTGCAAAAA GTGAAGATGC CAGCTGCTTT TCTGCAAAGT
3601CTGTGGAGCA GTACTATGGC TGGAACATTG GAAAAAGGAG AGCCGCTGAG TGGCAAAGAG
3661CAATGACAAT GCGAAAAGTC TTACAAGAAA TCCTGGAGAA GAATCCGAGA TTTCACCACC
3721TGACTCCCCT CAAAACCAAG CACATCGCTC ACTGGTGCCG CTGTCATGGC TACACCCCAC
3781CGGACCCTGA GAGCCTGAGG AATGACGGGG ACTCTATCGA GGACGTGCTG ACCCAGATCG
3841ACAGCGAGCC CGAGTGCCCA TCATCATTCT CCTCTGCTGA CAACCTCTGC CGCAAACTGG
3901AGGACCTGCA ACAGTTCCAG AAAAGGGAAC CCGAGAATGA GGAGGAGGTG GACATCCTCA
3961GCCTCTCCGA GCCAGTGAAG ATAAACATCA AGAAGGAGCA GGAAGAGAAA CAAGAGGAAG
4021TCAAGTTCTA CCTGCCACCA ACCCCAGGGT CTGAATTTAT TGGGGATGTC ACACAGAAGA
4081TTGGGATCAC CCTGCAGCCC GTGGCACTCC ACAGGAACGT GTATGCGTCC GTGGTGGAGG
4141ACATGATCCT GAAGGCTACA GAACAGCTGG TGAATGATAT CCTGAGACAG GCTTTGGCAG
4201TTGGATACCA GACAGCTTCT CACAACAGGA TTCCCAAAGA AATTACAGTG AGTAATATTC
4261ACCAGGCCAT TTGCAACATT CCTTTTCTGG ACTTCCTCAC AAACAAACAC ATGGGAATAT
4321TGAATGAGGA CCAGTTGCCA ACTTTCTTGT ACAAAGTTGG cattataaga aagcattgct
4381tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)