Construct: ORF ccsbBroadEn_08640

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006358.1_s300c1, BRDN0000396845
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
EIF4ENIF1 (56478)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56478 EIF4ENIF1 eukaryotic translation init... NM_001164502.2 99.9% 100% 1704C>T
2 human 56478 EIF4ENIF1 eukaryotic translation init... XM_005261686.3 82.2% 82.2% 297_785del;1477_1512del;2229C>T
3 human 56478 EIF4ENIF1 eukaryotic translation init... XM_005261687.3 82.2% 82.2% 297_785del;1477_1512del;2229C>T
4 human 56478 EIF4ENIF1 eukaryotic translation init... XM_005261688.3 82.2% 82.2% 297_785del;1477_1512del;2229C>T
5 human 56478 EIF4ENIF1 eukaryotic translation init... XM_011530281.3 82.2% 82.2% 297_785del;1477_1512del;2229C>T
6 human 56478 EIF4ENIF1 eukaryotic translation init... NM_001164501.2 82.1% 82.1% (many diffs)
7 human 56478 EIF4ENIF1 eukaryotic translation init... NM_019843.4 82.1% 82.1% (many diffs)
8 human 56478 EIF4ENIF1 eukaryotic translation init... XM_011530280.2 82.1% 82.1% (many diffs)
9 human 56478 EIF4ENIF1 eukaryotic translation init... XM_017028864.2 82.1% 82.1% (many diffs)
10 human 56478 EIF4ENIF1 eukaryotic translation init... XM_006724281.4 78.9% 78.9% (many diffs)
11 human 56478 EIF4ENIF1 eukaryotic translation init... XM_017028863.2 78.8% 78.8% (many diffs)
12 human 56478 EIF4ENIF1 eukaryotic translation init... XR_001755264.2 38.2% (many diffs)
13 mouse 74203 Eif4enif1 eukaryotic translation init... NM_001166547.1 72.2% 72.2% (many diffs)
14 mouse 74203 Eif4enif1 eukaryotic translation init... NM_023743.2 72.2% 72.2% (many diffs)
15 mouse 74203 Eif4enif1 eukaryotic translation init... XM_006514841.2 72.2% 72.2% (many diffs)
16 mouse 74203 Eif4enif1 eukaryotic translation init... XM_006514842.3 72.2% 72.2% (many diffs)
17 mouse 74203 Eif4enif1 eukaryotic translation init... XM_006514843.3 72.2% 72.2% (many diffs)
18 mouse 74203 Eif4enif1 eukaryotic translation init... NM_001166548.1 71.8% 71.3% (many diffs)
19 mouse 74203 Eif4enif1 eukaryotic translation init... NM_001166549.1 71.8% 71.3% (many diffs)
20 mouse 74203 Eif4enif1 eukaryotic translation init... XM_006514844.2 71.8% 71.3% (many diffs)
21 mouse 74203 Eif4enif1 eukaryotic translation init... XM_017314806.1 71.8% 71.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2499
ORF length:
2433
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA TAGGAGAAGT ATGGGTGAAA CAGAAAGTGG AGATGCTTTC CTTGACCTGA
121AGAAGCCTCC TGCCTCCAAA TGCCCCCATC GCTATACAAA AGAAGAACTC TTGGATATAA
181AAGAACTCCC CCATTCCAAA CAGAGGCCTT CATGCCTTTC TGAAAAATAT GACAGTGATG
241GTGTCTGGGA CCCTGAGAAG TGGCATGCCT CTCTCTACCC AGCTTCAGGG CGGAGCTCAC
301CAGTGGAAAG TCTGAAGAAA GAGTTGGATA CAGACCGGCC TTCCCTGGTG CGCAGGATAG
361TAGGTATAGT AGAGTGCAAT GGAGGAGTGG CCGAAGAGGA TGAAGTGGAG GTCATCCTTG
421CACAGGAGCC TGCGGCTGAT CAGGAAGTGC CAAGGGATGC TGTCTTGCCT GAGCAGTCCC
481CAGGAGACTT TGACTTTAAT GAGTTCTTTA ACCTTGATAA GGTGCCATGC TTGGCTTCGA
541TGATAGAAGA TGTTTTGGGA GAAGGGTCAG TCTCTGCCAG TCGGTTCAGT AGGTGGTTCT
601CTAACCCGAG CAGATCAGGA AGCCGATCCA GCAGTCTTGG GTCAACACCA CATGAAGAGC
661TAGAGAGACT TGCAGGTCTG GAGCAAGCCA TCCTCTCTCC TGGACAGAAC TCGGGGAATT
721ACTTTGCTCC TATACCATTG GAAGACCATG CTGAAAATAA AGTGGATATT TTAGAAATGC
781TACAGAAAGC CAAAGTGGAT TTGAAACCTC TTCTTTCCAG CCTTTCTGCA AATAAAGAAA
841AACTTAAAGA AAGCTCACAT TCAGGGGTTG TGCTTTCAGT GGAGGAGGTA GAAGCAGGTC
901TGAAGGGCTT GAAGGTTGAC CAGCAAGTGA AGAATTCAAC TCCCTTCATG GCAGAACACC
961TAGAAGAGAC CTTGAGTGCC GTAACCAACA ATCGACAACT GAAGAAAGAC GGAGACATGA
1021CTGCGTTCAA CAAGCTAGTG AGCACAATGA AGCGAAACCT TGAAAGCCAT TTGATGTCCC
1081CTGCTGAGAT TCCAGGCCAG CCTGTCCCTA AGAACATCCT GCAGGAACTT CTGGGTCAAC
1141CAGTTCAGAG ACCTGCTTCT TCCAATCTTC TGAGTGGCCT TATGGGGAGC TTGGAGCCTA
1201CAACATCTTT ACTGGGCCAA AGAGCACCCT CTCCTCCCTT GTCACAGGTG TTTCAAACTC
1261GAGCAGCCTC AGCTGACTAC CTTCGCCCAA GAATACCATC ACCAATTGGT TTCACACCAG
1321GACCACAGCA GCTACTCGGA GATCCATTCC AAGGCATGCG CAAACCCATG AGCCCCATCA
1381CAGCCCAGCA GATGAGCCAG CTGGAGTTGC AACAGGCAGC TTTAGAAGGG CTGGCCTTGC
1441CACATGACCT TGCTGTACAG GCAGCAAACT TCTACCAGCC TGGTTTTGGC AAACCACAGG
1501TGGACAGAAC CAGAGATGGA TTCAGAAACA GGCAACAGCG AGTGACCAAG TCACCAGCAC
1561CCGTGCATCG AGGGAATTCC TCTTCCCCTG CCCCTGCTGC CTCCATCACA AGCATGCTTT
1621CTCCTTCCTT TACCCCTACC TCAGTGATTC GTAAGATGTA CGAGAGCAAA GAGAAAAGCA
1681AGGAGGAGCC AGCATCTGGA AAAGCAGCTC TTGGTGACAG TAAAGAGGAT ACTCAGAAGG
1741CCAGTGAAGA AAACCTCCTG TCATCCAGTT CTGTACCCAG TGCCGATCGA GACTCTTCTC
1801CCACTACAAA TTCCAAACTG TCAGCATTAC AGAGGTCTTC GTGTTCCACC CCACTGTCCC
1861AGGCCAACCG TTACACCAAA GAACAAGATT ATCGACCTAA AGCAACTGGG AGAAAAACAC
1921CCACCTTGGC ATCCCCAGTT CCTACAACAC CTTTTCTCCG CCCTGTCCAC CAAGTTCCCC
1981TTGTCCCCCA TGTCCCTATG GTTAGGCCTG CTCACCAGCT TCACCCAGGG TTGGTACAGA
2041GGATGCTGGC CCAGGGAGTA CATCCACAGC ATCTTCCAAG TTTGCTCCAA ACTGGTGTGC
2101TTCCTCCTGG GATGGACTTG AGTCATTTAC AGGGAATATC TGGCCCCATC CTGGGTCAGC
2161CCTTTTACCC TTTACCTGCT GCTAGTCACC CTCTCTTAAA CCCTCGTCCT GGAACACCTC
2221TGCATCTGGC AATGGTGCAA CAGCAGCTAC AGCGCTCAGT TCTGCATCCT CCAGGCTCTG
2281GTTCCCATGC AGCAGCTGTC AGCGTTCAGA CAACCCCTCA GAACGTGCCC AGCCGGTCAG
2341GCCTGCCCCA CATGCACTCC CAGCTGGAGC ATCGCCCCAG CCAGAGGAGC AGCTCCCCTG
2401TGGGCCTTGC CAAATGGTTT GGCTCAGATG TGCTACAGCA ACCCCTGCCC TCCATGCCCG
2461CCAAAGTTAT CAGTGTAGAT GAATTGGAAT ACCGACAGTG CCCAACTTTC GTGTACAAAG
2521Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)