Construct: ORF ccsbBroadEn_08707

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003419.1_s300c1, BRDN0000396809
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PAK5 (57144)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57144 PAK5 p21 (RAC1) activated kinase 5 NM_020341.4 99.8% 99.7% 79C>G;1208C>A;2127C>T
2 human 57144 PAK5 p21 (RAC1) activated kinase 5 NM_177990.3 99.8% 99.7% 79C>G;1208C>A;2127C>T
3 human 57144 PAK5 p21 (RAC1) activated kinase 5 XM_017027960.1 99.8% 99.7% 79C>G;1208C>A;2127C>T
4 human 57144 PAK5 p21 (RAC1) activated kinase 5 XM_017027961.1 99.8% 99.7% 79C>G;1208C>A;2127C>T
5 human 57144 PAK5 p21 (RAC1) activated kinase 5 XM_017027962.1 99.8% 99.7% 79C>G;1208C>A;2127C>T
6 human 57144 PAK5 p21 (RAC1) activated kinase 5 XM_017027963.1 99.8% 99.7% 79C>G;1208C>A;2127C>T
7 human 57144 PAK5 p21 (RAC1) activated kinase 5 XM_017027964.1 99.8% 99.7% 79C>G;1208C>A;2127C>T
8 human 57144 PAK5 p21 (RAC1) activated kinase 5 XM_017027965.1 99.8% 99.7% 79C>G;1208C>A;2127C>T
9 mouse 241656 Pak7 p21 protein (Cdc42/Rac)-act... NM_172858.2 89.6% 93.6% (many diffs)
10 mouse 241656 Pak7 p21 protein (Cdc42/Rac)-act... XM_006499509.1 89.6% 93.6% (many diffs)
11 mouse 241656 Pak7 p21 protein (Cdc42/Rac)-act... XM_011239531.1 89.6% 93.6% (many diffs)
12 mouse 241656 Pak7 p21 protein (Cdc42/Rac)-act... XM_017318217.1 89.6% 93.6% (many diffs)
13 mouse 241656 Pak7 p21 protein (Cdc42/Rac)-act... XM_017318218.1 89.6% 93.6% (many diffs)
14 mouse 241656 Pak7 p21 protein (Cdc42/Rac)-act... XM_006499508.3 87.5% 91.4% (many diffs)
15 mouse 241656 Pak7 p21 protein (Cdc42/Rac)-act... XM_017318219.1 57.7% 61.7% (many diffs)
16 mouse 241656 Pak7 p21 protein (Cdc42/Rac)-act... XM_006499510.3 56.3% 60.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2223
ORF length:
2157
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTT TGGGAAGAAA AAGAAAAAGA TTGAAATATC TGGCCCGTCC AACTTTGAAC
121ACAGGGTTCA TACTGGGTTT GATGCACAAG AGCAGAAGTT TACCGGCCTT CCCCAGCAGT
181GGCACAGCCT GTTAGCAGAT ACGGCCAACA GGCCAAAGCC TATGGTGGAC CCTTCATGCA
241TCACACCCAT CCAGCTGGCT CCTATGAAGA CAATCGTTAG AGGAAACAAA CCCTGCAAGG
301AAACCTCCAT CAACGGCCTG CTAGAGGATT TTGACAACAT CTCGGTGACT CGCTCCAACT
361CCCTAAGGAA AGAAAGCCCA CCCACCCCAG ATCAGGGAGC CTCCAGCCAC GGTCCAGGCC
421ACGCGGAAGA AAATGGCTTC ATCACCTTCT CCCAGTATTC CAGCGAATCC GATACTACTG
481CTGACTACAC GACCGAAAAG TACAGGGAGA AGAGTCTCTA TGGAGATGAT CTGGATCCGT
541ATTATAGAGG CAGCCACGCA GCCAAGCAAA ATGGGCACGT AATGAAAATG AAGCACGGGG
601AGGCCTACTA TTCTGAGGTG AAGCCTTTGA AATCCGATTT TGCCAGATTT TCTGCCGATT
661ATCACTCACA TTTGGACTCA CTGAGCAAAC CAAGTGAATA CAGTGACCTC AAGTGGGAGT
721ATCAGAGAGC CTCGAGTAGC TCCCCTCTGG ATTATTCATT CCAATTCACA CCTTCTAGAA
781CTGCAGGGAC CAGCGGGTGC TCCAAGGAGA GCCTGGCGTA CAGTGAAAGT GAATGGGGAC
841CCAGCCTGGA TGACTATGAC AGGAGGCCAA AGTCTTCGTA CCTGAATCAG ACAAGCCCTC
901AGCCCACCAT GCGGCAGAGG TCCAGGTCAG GCTCGGGACT CCAGGAACCG ATGATGCCAT
961TTGGAGCAAG TGCATTTAAA ACCCATCCCC AAGGACACTC CTACAACTCC TACACCTACC
1021CTCGCTTGTC CGAGCCCACA ATGTGCATTC CAAAGGTGGA TTACGATCGA GCACAGATGG
1081TCCTCAGCCC TCCACTGTCA GGGTCTGACA CCTACCCCAG GGGCCCTGCC AAACTACCTC
1141AAAGTCAAAG CAAATCGGGC TATTCCTCAA GCAGTCACCA GTACCCGTCT GGGTACCACA
1201AAGCCACCTT GTACCATCAC CCCTCCCTGC AGAGCAGTTC GCAGTACATC TCCACGGCTT
1261CCTACCTGAG CTACCTCAGC CTCTCATCCA GCACCTACCC GCCGCCCAGC TGGGGCTCCT
1321CCTCCGACCA GCAGCCCTCC AGGGTGTCCC ATGAACAGTT TCGGGCGGCC CTGCAGCTGG
1381TGGTCAGCCC AGGAGACCCC AGGGAATACT TGGCCAACTT TATCAAAATC GGGGAAGGCT
1441CAACCGGCAT CGTATGCATC GCCACCGAGA AACACACAGG GAAACAAGTT GCAGTGAAGA
1501AAATGGACCT CCGGAAGCAA CAGAGACGAG AACTGCTTTT CAATGAGGTC GTGATCATGC
1561GGGATTACCA CCATGACAAT GTGGTTGACA TGTACAGCAG CTACCTTGTC GGCGATGAGC
1621TCTGGGTGGT CATGGAGTTT CTAGAAGGTG GTGCCTTGAC AGACATTGTG ACTCACACCA
1681GAATGAATGA AGAACAGATA GCTACTGTCT GCCTGTCAGT TCTGAGAGCT CTCTCCTACC
1741TTCATAACCA AGGAGTGATT CACAGGGACA TAAAAAGTGA CTCCATCCTC CTGACAAGCG
1801ATGGCCGGAT AAAGTTGTCT GATTTTGGTT TCTGTGCTCA AGTTTCCAAA GAGGTGCCGA
1861AGAGGAAATC ATTGGTTGGC ACTCCCTACT GGATGGCCCC TGAGGTGATT TCTAGGCTAC
1921CTTATGGGAC AGAGGTGGAC ATCTGGTCCC TCGGGATCAT GGTGATAGAA ATGATTGATG
1981GCGAGCCCCC CTACTTCAAT GAGCCTCCCC TCCAGGCGAT GCGGAGGATC CGGGACAGTT
2041TACCTCCAAG AGTGAAGGAC CTACACAAGG TTTCTTCAGT GCTCCGGGGA TTCCTAGACT
2101TGATGTTGGT GAGGGAGCCC TCTCAGAGAG CAACAGCCCA GGAACTCCTC GGACATCCAT
2161TCTTAAAACT AGCAGGTCCA CCGTCTTGCA TTGTCCCCCT CATGAGACAA TACAGGCATC
2221ACTGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
2281gcaacgaac

Download FASTA (ORF) (Full)

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