Construct: ORF ccsbBroadEn_09080
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013938.1_s300c1, BRDN0000387356
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCNL2 (81669)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 81669 | CCNL2 | cyclin L2 | NM_001039577.4 | 99.8% | 99.5% | 212C>G |
| 2 | human | 81669 | CCNL2 | cyclin L2 | XR_002957683.1 | 65% | (many diffs) | |
| 3 | human | 81669 | CCNL2 | cyclin L2 | XR_001737450.2 | 51.3% | (many diffs) | |
| 4 | human | 81669 | CCNL2 | cyclin L2 | XR_946769.2 | 45.5% | (many diffs) | |
| 5 | human | 81669 | CCNL2 | cyclin L2 | NM_030937.6 | 43% | 42.1% | (many diffs) |
| 6 | human | 81669 | CCNL2 | cyclin L2 | XM_011542216.3 | 40.4% | 33.6% | (many diffs) |
| 7 | human | 81669 | CCNL2 | cyclin L2 | XR_002957678.1 | 23.2% | (many diffs) | |
| 8 | human | 81669 | CCNL2 | cyclin L2 | XR_002957676.1 | 22.4% | (many diffs) | |
| 9 | human | 81669 | CCNL2 | cyclin L2 | XR_001737453.1 | 21.3% | 1_30del;242C>G;709_3166del | |
| 10 | human | 81669 | CCNL2 | cyclin L2 | NR_146722.2 | 18.6% | 1_29del;241C>G;708_3634del | |
| 11 | human | 81669 | CCNL2 | cyclin L2 | XR_001737455.1 | 17.6% | 1_30del;242C>G;709_3836del | |
| 12 | human | 81669 | CCNL2 | cyclin L2 | NR_146723.2 | 16.5% | 1_29del;241C>G;708_4084del | |
| 13 | human | 81669 | CCNL2 | cyclin L2 | XR_001737452.1 | 15.8% | 1_30del;242C>G;709_4267del | |
| 14 | human | 81669 | CCNL2 | cyclin L2 | XR_001737454.1 | 15.4% | 1_30del;242C>G;709_4385del | |
| 15 | human | 81669 | CCNL2 | cyclin L2 | XR_002957684.1 | 15.3% | 1_30del;242C>G;709_4399del | |
| 16 | human | 81669 | CCNL2 | cyclin L2 | XR_426630.3 | 15.3% | 1_30del;242C>G;709_4406del | |
| 17 | human | 81669 | CCNL2 | cyclin L2 | NR_135154.2 | 12.8% | 1_29del;241C>G;708_5266del | |
| 18 | mouse | 56036 | Ccnl2 | cyclin L2 | XM_011250305.2 | 85.7% | 90.7% | (many diffs) |
| 19 | mouse | 56036 | Ccnl2 | cyclin L2 | NM_207678.1 | 37.1% | 38.6% | (many diffs) |
| 20 | mouse | 56036 | Ccnl2 | cyclin L2 | XR_001784165.1 | 17.2% | (many diffs) | |
| 21 | mouse | 56036 | Ccnl2 | cyclin L2 | XR_001784166.1 | 15.3% | (many diffs) | |
| 22 | mouse | 56036 | Ccnl2 | cyclin L2 | XR_881434.2 | 12.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 744
- ORF length:
- 678
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGCGGCGGCG GCGGCGGCTG GTGCTGCAGG GTCGGCAGCT CCCGCGGCAG 121 CGGCCGGCGC CCCGGGATCT GGGGGCGCAC CCTCAGGGTC GCAGGGGGTG CTGATCGGGG 181 ACAGGCTGTA CTCCGGGGTG CTCATCACCT TGGAGAACTG CCTCCTGCCT GACGACAAGC 241 TCCGTTTCAC GCCGTCCATG TCGAGCGGCC TCGACAGCGA CACAGAGACC GACCTCCGCG 301 TGGTGGGCTG CGAGCTCATC CAGGCGGCCG GTATCCTGCT CCGCCTGCCG CAGGTGGCCA 361 TGGCTACCGG GCAGGTGTTG TTCCAGCGGT TCTTTTATAC CAAGTCCTTC GTGAAGCACT 421 CCATGGAGCA TGTGTCAATG GCCTGTGTCC ACCTGGCTTC CAAGATAGAA GAGGCCCCAA 481 GACGCATACG GGACGTCATC AATGTGTTTC ACCGCCTTCG ACAGCTGAGA GACAAAAAGA 541 AGCCCGTGCC TCTACTACTG GATCAAGATT ATGTTAATTT AAAGAACCAA ATTATAAAGG 601 CGGAAAGACG AGTTCTCAAA GAGTTGGGTT TCTGCGTCCA TGTGAAGCAT CCTCATAAGA 661 TAATCGTTAT GTACCTTCAG GTGTTAGAGT GTGAGCGTAA CCAACACCTG GTCCAGACCT 721 CATGGGTAGC CTCTGAGGGT AAGTGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa 781 agcattgctt atcaatttgt tgcaacgaac