Construct: ORF ccsbBroadEn_09113

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016374.1_s300c1, BRDN0000457269
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LONP2 (83752)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 83752 LONP2 lon peptidase 2, peroxisomal NM_031490.5 99.9% 99.8% 2548A>T
2 human 83752 LONP2 lon peptidase 2, peroxisomal NM_001300948.3 94.7% 94.7% 468_469ins132;2416A>T
3 human 83752 LONP2 lon peptidase 2, peroxisomal NM_001348078.2 93.9% 93.9% 2548A>T;2556_2718delinsG
4 human 83752 LONP2 lon peptidase 2, peroxisomal XM_017023755.2 75.9% 75.8% 1939_1941delATA;1943C>T;1947_1948ins612
5 human 83752 LONP2 lon peptidase 2, peroxisomal XM_017023756.1 70.7% 70.6% (many diffs)
6 mouse 66887 Lonp2 lon peptidase 2, peroxisomal NM_025827.3 88.2% 95.4% (many diffs)
7 mouse 66887 Lonp2 lon peptidase 2, peroxisomal NM_001168591.1 44.5% 47.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2625
ORF length:
2556
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTCATCAGTG AGCCCCATCC AGATCCCCAG TCGCCTCCCG CTGCTGCTCA
121CCCACGAGGG CGTCCTGCTG CCCGGCTCCA CCATGCGCAC CAGCGTGGAC TCGGCCCGCA
181ACCTGCAGCT GGTGCGGAGC CGCCTTCTGA AGGGCACGTC GCTGCAAAGC ACCATCCTGG
241GCGTCATCCC CAACACGCCT GACCCCGCCA GCGACGCGCA GGACCTGCCG CCGCTGCACA
301GGATTGGCAC AGCTGCACTG GCCGTTCAGG TTGTGGGCAG TAACTGGCCC AAGCCCCACT
361ACACTCTGTT GATTACAGGC CTATGCCGTT TCCAGATTGT ACAGGTCTTA AAAGAGAAGC
421CATATCCCAT TGCTGAAGTG GAGCAGTTGG ACCGACTTGA GGAGTTTCCC AACACCTGTA
481AAATGAGGGA GGAGCTAGGA GAACTATCAG AGCAGTTTTA CAAATATGCA GTACAATTGG
541TTGAAATGTT GGATATGTCT GTCCCTGCAG TTGCTAAATT GAGACGTCTT TTAGATAGTC
601TTCCAAGGGA AGCTTTACCA GACATCTTGA CATCAATTAT CCGAACAAGC AACAAAGAGA
661AACTCCAGAT TTTAGATGCT GTGAGCCTAG AGGAGCGGTT CAAGATGACT ATACCACTGC
721TTGTCAGACA AATTGAAGGC CTGAAATTGC TTCAAAAAAC CAGAAAACCC AAGCAAGATG
781ATGATAAGAG GGTTATAGCA ATACGCCCTA TTAGGAGAAT TACACATATC TCAGGTACTT
841TAGAAGATGA AGATGAAGAT GAAGATAATG ATGACATTGT CATGCTAGAG AAAAAAATAC
901GAACATCTAG TATGCCAGAG CAGGCCCATA AAGTCTGTGT CAAAGAGATA AAGAGACTCA
961AAAAAATGCC TCAGTCAATG CCAGAATATG CTCTGACTAG AAATTATTTG GAACTTATGG
1021TAGAACTTCC TTGGAACAAA AGTACAACTG ACCGCCTGGA CATTAGGGCA GCCCGGATTC
1081TTCTGGATAA TGACCATTAC GCCATGGAAA AATTGAAGAA AAGAGTACTG GAATACTTGG
1141CTGTCAGACA GCTCAAAAAT AACCTGAAGG GCCCAATCCT ATGCTTTGTT GGCCCTCCTG
1201GAGTTGGTAA AACAAGTGTG GGAAGATCAG TGGCCAAGAC TCTAGGTCGA GAGTTCCACA
1261GGATTGCACT TGGAGGAGTA TGTGATCAGT CTGACATTCG AGGACACAGG CGCACCTATG
1321TTGGCAGCAT GCCTGGTCGC ATCATCAACG GCTTGAAGAC TGTGGGAGTG AACAACCCAG
1381TGTTCCTATT AGATGAGGTT GACAAACTGG GAAAAAGTCT ACAGGGTGAT CCAGCAGCAG
1441CTCTGCTTGA GGTGTTGGAT CCTGAACAAA ACCATAACTT CACAGATCAT TATCTAAATG
1501TGGCCTTTGA CCTTTCTCAA GTTCTTTTTA TAGCTACTGC CAACACCACT GCTACCATTC
1561CAGCTGCCTT GTTGGACAGA ATGGAGATCA TTCAGGTTCC AGGTTATACA CAGGAGGAGA
1621AGATAGAGAT TGCCCATAGG CACTTGATCC CCAAGCAGCT GGAACAACAT GGGCTGACTC
1681CACAGCAGAT TCAGATACCC CAGGTCACCA CTCTTGACAT CATCACCAGG TATACCAGAG
1741AGGCAGGGGT TCGTTCTCTG GATAGAAAAC TTGGGGCCAT TTGCCGAGCT GTGGCCGTGA
1801AGGTGGCAGA AGGACAGCAT AAGGAAGCCA AGTTGGACCG TTCTGATGTG ACTGAGAGAG
1861AAGGTTGCAG AGAACACATC TTAGAAGATG AAAAACCTGA ATCTATCAGT GACACTACTG
1921ACTTGGCTCT ACCACCTGAA ATGCCGATTT TGATTGATTT CCATGCTCTG AAAGACATCC
1981TTGGGCCCCC GATGTATGAA ATGGAGGTAT CTCAGCGTTT GAGTCAGCCA GGAGTAGCAA
2041TAGGTTTGGC TTGGACTCCC TTAGGTGGAG AAATCATGTT CGTGGAGGCG AGTCGAATGG
2101ATGGCGAGGG CCAGTTAACT CTGACCGGCC AGCTCGGGGA CGTGATGAAG GAGTCCGCCC
2161ACCTCGCTAT CAGCTGGCTC CGCAGCAACG CAAAGAAGTA CCAGCTGACC AATGCTTTTG
2221GAAGTTTTGA TCTTCTTGAC AACACAGACA TCCATCTGCA CTTCCCAGCT GGAGCTGTCA
2281CAAAAGATGG ACCATCTGCT GGAGTTACCA TAGTAACCTG TCTCGCCTCA CTTTTTAGTG
2341GGCGGCTGGT ACGTTCAGAT GTAGCCATGA CTGGAGAAAT TACACTGAGA GGTCTTGTTC
2401TTCCAGTGGG TGGAATTAAA GACAAAGTGC TGGCGGCACA CAGAGCGGGA CTGAAGCAAG
2461TCATTATTCC TCGGAGAAAT GAAAAAGACC TTGAGGGAAT CCCAGGCAAC GTACGACAGG
2521ATTTAAGTTT TGTCACAGCA AGCTGCCTGG ATGAGGTTCT TAATGCAGCT TTTGATGGTG
2581GCTTTACTGT CAAGACCAGA CCTGGTCTGT TAAATTGCAA ACTGTTGCCA ACTTTCTTGT
2641ACAAAGTTGG cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)