Construct: ORF ccsbBroadEn_09245

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014581.1_s300c1, BRDN0000390468
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SERAC1 (84947)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84947 SERAC1 serine active site containi... NM_032861.4 99.8% 99.8% 249C>T;1627T>A
2 human 84947 SERAC1 serine active site containi... XM_024446573.1 99.8% 99.8% 249C>T;1627T>A
3 human 84947 SERAC1 serine active site containi... XM_011536196.3 97.2% 90.6% (many diffs)
4 human 84947 SERAC1 serine active site containi... XM_006715586.3 89.1% 89.1% 0_1ins210;39C>T;1417T>A
5 human 84947 SERAC1 serine active site containi... XM_011536198.3 89.1% 89.1% 0_1ins210;39C>T;1417T>A
6 human 84947 SERAC1 serine active site containi... NR_073096.2 74.2% (many diffs)
7 human 84947 SERAC1 serine active site containi... XR_942606.2 48.3% (many diffs)
8 human 84947 SERAC1 serine active site containi... XR_001743697.2 47.6% (many diffs)
9 mouse 321007 Serac1 serine active site containi... NM_001111017.1 84.2% 86.6% (many diffs)
10 mouse 321007 Serac1 serine active site containi... NM_177311.4 80.5% 83.1% (many diffs)
11 mouse 321007 Serac1 serine active site containi... XM_006523234.3 79.2% 81.1% (many diffs)
12 mouse 321007 Serac1 serine active site containi... XM_006523235.3 75.2% 76.7% (many diffs)
13 mouse 321007 Serac1 serine active site containi... XM_017317508.1 71.6% 73.2% (many diffs)
14 mouse 321007 Serac1 serine active site containi... XM_006523236.3 65.3% 68.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2028
ORF length:
1962
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC CCTGGCTGCT TATTGCGTCA TCTGTTGCAG AAGAATAGGA ACCTCTACTT
121CCCCACCAAA AAGTGGCACA CACTGGAGAG ATATCAGAAA TATAATAAAG TTTACTGGAT
181CACTTATTTT AGGAGGTTCT TTATTTCTTA CATATGAAGT TCTGGCCCTG AAGAAGGCTG
241TGACATTAGA TACTCAAGTG GTAGAACGAG AAAAAATGAA GTCATATATA TATGTGCACA
301CAGTTTCTTT AGATAAAGGA GAAAATCATG GTATTGCCTG GCAGGCAAGA AAAGAACTTC
361ACAAAGCAGT AAGAAAAGTA TTGGCAACAT CAGCCAAGAT ACTGCGGAAT CCATTTGCTG
421ATCCTTTTAG TACAGTTGAT ATAGAAGATC ATGAGTGTGC TGTGTGGCTG CTCCTACGGA
481AGAGCAAGTC AGATGACAAA ACCACGCGAC TCGAGGCTGT GCGGGAAATG TCGGAGACCC
541ATCACTGGCA TGATTACCAG TATAGGATAA TTGCTCAAGC CTGTGATCCG AAAACTCTTA
601TTGGTTTGGC ACGAAGCGAA GAGAGTGATC TTCGCTTTTT TCTCCTACCA CCTCCTTTGC
661CATCTTTAAA AGAAGATTCT TCCACTGAAG AAGAGCTCAG ACAGTTGCTG GCTTCCTTAC
721CTCAAACAGA GCTAGATGAG TGTATCCAGT ATTTTACATC TTTGGCTCTT AGTGAAAGCA
781GTCAGAGTCT AGCTGCTCAG AAGGGTGGTT TATGGTGTTT TGGAGGAAAT GGACTTCCTT
841ATGCTGAAAG TTTTGGAGAA GTTCCTTCAG CAACAGTGGA AATGTTCTGT TTAGAAGCTA
901TAGTAAAACA TTCTGAGATA TCCACACATT GTGATAAAAT CGAAGCAAAT GGAGGCCTGC
961AGCTACTTCA GAGGCTGTAC CGACTTCACA AGGACTGCCC TAAAGTACAG AGAAATATAA
1021TGCGTGTCAT TGGAAATATG GCTTTGAATG AACATCTTCA TTCTTCTATA GTTCGCTCAG
1081GCTGGGTTTC CATCATGGCA GAAGCAATGA AATCTCCCCA CATTATGGAG TCCTCACACG
1141CTGCCAGAAT CCTGGCAAAT CTAGACCGAG AAACTGTGCA AGAAAAATAT CAGGATGGCG
1201TATATGTGCT GCATCCCCAA TATCGAACAA GTCAGCCCAT TAAAGCAGAT GTCCTTTTTA
1261TTCATGGCCT TATGGGAGCA GCATTCAAAA CATGGCGCCA GCAGGACAGT GAGCAGGCTG
1321TAATTGAAAA ACCTATGGAG GATGAAGACA GATATACGAC GTGCTGGCCC AAGACATGGT
1381TAGCAAAAGA CTGTCCTGCT CTCCGAATTA TATCTGTGGA GTATGACACC AGCCTCAGCG
1441ACTGGAGAGC AAGGTGCCCT ATGGAAAGAA AGTCCATTGC ATTCAGAAGC AACGAACTTC
1501TTAGGAAGCT CAGAGCTGCT GGTGTTGGGG ATAGGCCAGT GGTTTGGATA TCACATAGCA
1561TGGGAGGTCT TCTTGTCAAA AAGATGCTGT TGGAAGCCTC TACGAAGCCA GAAATGAGTA
1621CTGTTATCAA CAATACCAGA GGAATAATTT TTTATAGTGT CCCTCATCAT GGATCACGTT
1681TGGCTGAATA CACTGTTAAT ATTCGCTATC TTCTCTTCCC CTCGTTGGAA GTCAAAGAAC
1741TCAGCAAGGA TTCTCCTGCA CTTAAAACAC TACAAGATGA CTTTCTGGAG TTTGCTAAAG
1801ACAAAAACTT CCAGGTGCTG AATTTTGTGG AAACACTACC AACCTACATT GGCAGCATGA
1861TTAAGCTCCA TGTGGTACCT GTGGAATCAG CAGATTTAGG CATTGGAGAT CTAATTCCTG
1921TGGATGTTAA CCATTTGAAC ATTTGTAAGC CAAAGAAAAA GGATGCTTTT TTGTACCAGC
1981GTACTTTACA ATTCATTCGT GAAGCTTTAG CCAAAGACCT TGAAAACTAC CCAACTTTCT
2041TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)

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