Construct: ORF ccsbBroadEn_09255
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001607.1_s300c1, BRDN0000394500
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- BAGE3 (85318)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 85319 | BAGE2 | BAGE family member 2 | NM_182482.2 | 99.6% | 99% | 214C>G |
| 2 | human | 85318 | BAGE3 | BAGE family member 3 | NM_182481.1 | 99% | 98.1% | 214C>G;309A>G;317A>G |
| 3 | human | 574 | BAGE | B melanoma antigen | NM_001187.1 | 36.3% | 34.8% | (many diffs) |
| 4 | human | 85316 | BAGE5 | BAGE family member 5 | NM_182484.2 | 36% | 35.7% | (many diffs) |
| 5 | human | 85317 | BAGE4 | BAGE family member 4 | NM_181704.1 | 33.9% | 33.9% | (many diffs) |
| 6 | human | 58508 | KMT2C | lysine methyltransferase 2C | XR_428183.3 | 2.3% | (many diffs) | |
| 7 | human | 58508 | KMT2C | lysine methyltransferase 2C | XM_011516453.2 | 1.9% | .4% | (many diffs) |
| 8 | human | 58508 | KMT2C | lysine methyltransferase 2C | NM_170606.3 | 1.9% | .4% | (many diffs) |
| 9 | human | 58508 | KMT2C | lysine methyltransferase 2C | XM_017012488.1 | 1.9% | .4% | (many diffs) |
| 10 | human | 58508 | KMT2C | lysine methyltransferase 2C | XM_006716079.3 | 1.9% | .4% | (many diffs) |
| 11 | human | 58508 | KMT2C | lysine methyltransferase 2C | XM_005250031.4 | 1.9% | .4% | (many diffs) |
| 12 | human | 58508 | KMT2C | lysine methyltransferase 2C | XM_011516452.2 | 1.9% | .4% | (many diffs) |
| 13 | human | 58508 | KMT2C | lysine methyltransferase 2C | XM_017012487.1 | 1.9% | .4% | (many diffs) |
| 14 | human | 58508 | KMT2C | lysine methyltransferase 2C | XM_011516451.2 | 1.9% | .4% | (many diffs) |
| 15 | human | 58508 | KMT2C | lysine methyltransferase 2C | XM_017012486.1 | 1.9% | .4% | (many diffs) |
| 16 | human | 58508 | KMT2C | lysine methyltransferase 2C | XM_024446853.1 | 1.9% | .4% | (many diffs) |
| 17 | human | 58508 | KMT2C | lysine methyltransferase 2C | XM_006716078.3 | 1.9% | .4% | (many diffs) |
| 18 | human | 58508 | KMT2C | lysine methyltransferase 2C | XM_011516456.2 | 1.9% | .4% | (many diffs) |
| 19 | human | 58508 | KMT2C | lysine methyltransferase 2C | XM_017012485.1 | 1.9% | .4% | (many diffs) |
| 20 | human | 58508 | KMT2C | lysine methyltransferase 2C | XM_011516450.2 | 1.9% | .4% | (many diffs) |
| 21 | human | 58508 | KMT2C | lysine methyltransferase 2C | XM_017012484.1 | 1.9% | .4% | (many diffs) |
| 22 | human | 58508 | KMT2C | lysine methyltransferase 2C | XM_017012482.1 | 1.9% | .4% | (many diffs) |
| 23 | human | 58508 | KMT2C | lysine methyltransferase 2C | XM_017012483.1 | 1.9% | .4% | (many diffs) |
| 24 | human | 58508 | KMT2C | lysine methyltransferase 2C | XM_005250028.4 | 1.9% | .4% | (many diffs) |
| 25 | human | 58508 | KMT2C | lysine methyltransferase 2C | XM_024446852.1 | 1.9% | .5% | (many diffs) |
| 26 | human | 58508 | KMT2C | lysine methyltransferase 2C | XM_005250026.3 | 1.9% | .4% | (many diffs) |
| 27 | human | 58508 | KMT2C | lysine methyltransferase 2C | XM_005250027.4 | 1.9% | .4% | (many diffs) |
| 28 | human | 58508 | KMT2C | lysine methyltransferase 2C | XM_006716077.3 | 1.9% | .4% | (many diffs) |
| 29 | human | 58508 | KMT2C | lysine methyltransferase 2C | XM_017012481.1 | 1.9% | .4% | (many diffs) |
| 30 | human | 58508 | KMT2C | lysine methyltransferase 2C | XM_005250025.4 | 1.9% | .4% | (many diffs) |
| 31 | human | 58508 | KMT2C | lysine methyltransferase 2C | XM_017012480.1 | 1.9% | .4% | (many diffs) |
| 32 | human | 58508 | KMT2C | lysine methyltransferase 2C | XM_011516454.2 | 1% | .5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 396
- ORF length:
- 327
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCGGCTGGA GTGGTTTTTC TGGCATTGTC TGCCCAGCTG CTCCAAGCCA 121 GGCTGATGAA GGAGGAGTCC CCTGTGGTGA GCTGGAGGTT GGAGCCTGAA GATGGCACAG 181 CTCTCGATGT GCATTTTGTA AGCACTTTGG AGCCACTATC AAATGCTGTG AAGAGAAATG 241 TACCCAGATG TATCATTATC CTTGTGCTGC AGGAGCCGAC AGCTTTCAGG ATTTCAGTCA 301 CATCTTCCTG CTTTGTCCAG AACACATTGA CCAAGCTCCT GAAAGATCGA AGGAAGATGC 361 AAACTGTGCA GTGTGCGACA GCCCGGGAGA CCTCTTTGCC AACTTTCTTG TACAAAGTtg 421 gcattataag aaagcattgc ttatcaattt gttgcaacga ac