Transcript: Human NM_001187.1

Homo sapiens B melanoma antigen (BAGE), mRNA.

Source:
NCBI, updated 2019-09-23
Taxon:
Homo sapiens (human)
Gene:
BAGE (574)
Length:
1004
CDS:
201..332

Additional Resources:

NCBI RefSeq record:
NM_001187.1
NBCI Gene record:
BAGE (574)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001187.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000172943 GAGGGATCATTGCCAGAGATT pLKO.1 767 3UTR 100% 4.950 6.930 N BAGE n/a
2 TRCN0000371412 GTTGTAAATTCCCTGAGTGTT pLKO_005 701 3UTR 100% 4.950 6.930 N BAGE n/a
3 TRCN0000167124 CTGAGTGTTATTCTACTTGTA pLKO.1 713 3UTR 100% 4.950 3.960 N BAGE n/a
4 TRCN0000167809 GATGTAAGTTTACTACGCATA pLKO.1 637 3UTR 100% 4.050 3.240 N BAGE n/a
5 TRCN0000371410 TATCAACGGTTTCATTGAAAT pLKO_005 805 3UTR 100% 13.200 9.240 N BAGE n/a
6 TRCN0000371359 AGCTCCTGAAAGATGTAAGTT pLKO_005 626 3UTR 100% 5.625 3.938 N BAGE n/a
7 TRCN0000371358 CAACCAATGTATTTACTGAAA pLKO_005 671 3UTR 100% 4.950 3.465 N BAGE n/a
8 TRCN0000173111 CGAGATTACAGCGATGTGCAT pLKO.1 466 3UTR 100% 2.640 1.848 N BAGE n/a
9 TRCN0000371414 ACTTTGGAGCCACTATCAAAT pLKO_005 496 3UTR 100% 13.200 6.600 Y BAGE3 n/a
10 TRCN0000172937 GCACTTTGGAGCCACTATCAA pLKO.1 494 3UTR 100% 5.625 2.813 Y BAGE2 n/a
11 TRCN0000167349 CTTTCAGGATTTCAGTCACAT pLKO.1 575 3UTR 100% 4.950 2.475 Y BAGE2 n/a
12 TRCN0000166864 CAGATGTATCATTATCCTTGT pLKO.1 537 3UTR 100% 4.050 2.025 Y BAGE3 n/a
13 TRCN0000173000 CCAGAACACATTGACCAAGCT pLKO.1 609 3UTR 100% 2.640 1.320 Y BAGE2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001187.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00148 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_00148 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000472238 AGTATTTGCGGTAGTCCAGACGAC pLX_317 100% 100% 100% V5 n/a
4 ccsbBroadEn_09255 pDONR223 100% 36.3% 34.8% None (many diffs) n/a
5 ccsbBroad304_09255 pLX_304 0% 36.3% 34.8% V5 (many diffs) n/a
6 TRCN0000468075 ATACTCGCAATGAAACTCCGACGA pLX_317 100% 36.3% 34.8% V5 (many diffs) n/a
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