Transcript: Human NM_181704.1

Homo sapiens BAGE family member 4 (BAGE4), mRNA.

Source:
NCBI, updated 2019-09-21
Taxon:
Homo sapiens (human)
Gene:
BAGE4 (85317)
Length:
1840
CDS:
189..308

Additional Resources:

NCBI RefSeq record:
NM_181704.1
NBCI Gene record:
BAGE4 (85317)

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_181704.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000168195 CCAGAAAGATCGAAGGAAGAT pLKO.1 547 3UTR 100% 4.950 2.970 N BAGE4 n/a
2 TRCN0000173051 CGAGGCAAGTCAAAGCTGAAA pLKO.1 1612 3UTR 100% 4.950 2.970 N BAGE4 n/a
3 TRCN0000371413 CTTCTGAAGTGAAGCATATTT pLKO_005 904 3UTR 100% 15.000 7.500 Y BAGE3 n/a
4 TRCN0000371417 TATAGCGGTTACTCCATTAAA pLKO_005 660 3UTR 100% 15.000 7.500 Y BAGE4 n/a
5 TRCN0000371414 ACTTTGGAGCCACTATCAAAT pLKO_005 413 3UTR 100% 13.200 6.600 Y BAGE3 n/a
6 TRCN0000168224 CCTGAGGAACAGTTGGTTATA pLKO.1 1143 3UTR 100% 13.200 6.600 Y BAGE2 n/a
7 TRCN0000168341 GCATGGGTAAACCAGCTATTA pLKO.1 1484 3UTR 100% 13.200 6.600 Y BAGE2 n/a
8 TRCN0000371415 GATATAGCGGTTACTCCATTA pLKO_005 658 3UTR 100% 10.800 5.400 Y BAGE3 n/a
9 TRCN0000377661 GGCCAAGTGCGATGTGCATTT pLKO_005 385 3UTR 100% 10.800 5.400 Y BAGE4 n/a
10 TRCN0000168024 CGTGTGACAAAGGGTATCATA pLKO.1 767 3UTR 100% 5.625 2.813 Y BAGE2 n/a
11 TRCN0000167620 GAGGAACAGTTGGTTATAGAA pLKO.1 1146 3UTR 100% 5.625 2.813 Y BAGE5 n/a
12 TRCN0000168695 GCAAACAATCGGGAGAAGATA pLKO.1 725 3UTR 100% 5.625 2.813 Y BAGE4 n/a
13 TRCN0000172937 GCACTTTGGAGCCACTATCAA pLKO.1 411 3UTR 100% 5.625 2.813 Y BAGE2 n/a
14 TRCN0000167349 CTTTCAGGATTTCAGTCACAT pLKO.1 492 3UTR 100% 4.950 2.475 Y BAGE2 n/a
15 TRCN0000168607 GATCGAAGGAAGATGCAAACT pLKO.1 554 3UTR 100% 4.950 2.475 Y BAGE2 n/a
16 TRCN0000168340 GCAAGATGCTAGTGTGTGATA pLKO.1 746 3UTR 100% 4.950 2.475 Y BAGE4 n/a
17 TRCN0000371416 GCACAGCTCTGTGATTCATCT pLKO_005 295 CDS 100% 4.950 2.475 Y BAGE4 n/a
18 TRCN0000168767 GCAGTTGTTAGAGGAACCTAA pLKO.1 1013 3UTR 100% 4.950 2.475 Y BAGE4 n/a
19 TRCN0000168639 GTGTGTGATACGTGTGACAAA pLKO.1 757 3UTR 100% 4.950 2.475 Y BAGE5 n/a
20 TRCN0000166864 CAGATGTATCATTATCCTTGT pLKO.1 454 3UTR 100% 4.050 2.025 Y BAGE3 n/a
21 TRCN0000167251 CAGATTTCTAATGAGGCTGAT pLKO.1 864 3UTR 100% 4.050 2.025 Y BAGE4 n/a
22 TRCN0000172796 GCTGGAAACATCATGCCAACA pLKO.1 1434 3UTR 100% 4.050 2.025 Y BAGE5 n/a
23 TRCN0000168727 GTTTCATACCAAGGAGGCAAA pLKO.1 1266 3UTR 100% 4.050 2.025 Y BAGE5 n/a
24 TRCN0000173000 CCAGAACACATTGACCAAGCT pLKO.1 526 3UTR 100% 2.640 1.320 Y BAGE2 n/a
25 TRCN0000168402 GAAAGATCGAAGGAAGATGCA pLKO.1 550 3UTR 100% 2.640 1.320 Y BAGE3 n/a
26 TRCN0000167726 GAAATGCAAATGAATACCGAA pLKO.1 834 3UTR 100% 2.640 1.320 Y BAGE5 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_181704.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00148 pDONR223 100% 88.3% 86% None (many diffs) n/a
2 ccsbBroad304_00148 pLX_304 0% 88.3% 86% V5 (many diffs) n/a
3 TRCN0000472238 AGTATTTGCGGTAGTCCAGACGAC pLX_317 100% 88.3% 86% V5 (many diffs) n/a
4 ccsbBroadEn_09255 pDONR223 100% 33.9% 33.9% None (many diffs) n/a
5 ccsbBroad304_09255 pLX_304 0% 33.9% 33.9% V5 (many diffs) n/a
6 TRCN0000468075 ATACTCGCAATGAAACTCCGACGA pLX_317 100% 33.9% 33.9% V5 (many diffs) n/a
Download CSV

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.