Construct: ORF ccsbBroadEn_09619

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016214.1_s300c1, BRDN0000457102
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ARMH4 (145407)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 145407 ARMH4 armadillo like helical doma... NM_001001872.4 99.9% 99.7% 287C>T;1837C>G
2 human 145407 ARMH4 armadillo like helical doma... XM_017021029.1 99.9% 99.7% 287C>T;1837C>G
3 human 145407 ARMH4 armadillo like helical doma... XM_017021030.2 99.7% 99.6% 287C>T;1837C>G;2254_2255insAGC
4 human 145407 ARMH4 armadillo like helical doma... NM_001320173.2 82.6% 80.6% (many diffs)
5 human 145407 ARMH4 armadillo like helical doma... XM_011536471.3 80.9% 78.2% (many diffs)
6 human 145407 ARMH4 armadillo like helical doma... XR_943399.3 54.8% (many diffs)
7 human 145407 ARMH4 armadillo like helical doma... XR_943398.3 54.7% (many diffs)
8 human 145407 ARMH4 armadillo like helical doma... XR_943395.2 23.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2391
ORF length:
2322
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GAGAGGACCG ATTGTATTGC ACATTTGTCT GGCTTTCTGT AGCCTTCTGC
121TTTTCAGCGT TGCCACACAA TGTCTGGCCT TCCCCAAAAT AGAAAGGAGG AGGGAGATAG
181CACATGTTCA TGCGGAAAAA GGGCAGTCCG ATAAGATGAA CACCGATGAC CTAGAAAATA
241GCTCTGTTAC CTCAAAGCAG ACTCCCCAAC TGGTGGTCTC TGAAGATCCA ATGATGATGT
301CAGCAGTACC ATCGGCAACA TCATTAAATA AAGCATTCTC GATTAACAAA GAAATCCAGC
361CTGGACAAGC TGGGCTCATG CAAACAGAAC GCCCTGGTGT TTCCACACCT ACTGAGTCAG
421GTGTCCCCTC AGCTGAAGAA GTATTTGGTT CCAGCCAGCC AGAGAGAATA TCTCCTGAAA
481GTGGACTTGC CAAGGCCATG TTAACCATTG CTATCACTGC GACTCCTTCT CTGACTGTTG
541ATGAAAAGGA GGAACTCCTT ACAAGCACTA ACTTTCAGCC CATTGTAGAA GAGATCACAG
601AAACCACAAA AGGTTTTCTG AAGTATATGG ATAATCAATC ATTTGCAACT GAAAGTCAGG
661AAGGAGTTGG TTTGGGACAT TCACCTTCAT CCTATGTGAA TACTAAGGAA ATGCTAACCA
721CCAATCCAAA GACTGAGAAA TTTGAAGCAG ACACAGACCA CAGGACAACT TCTTTTCCTG
781GTGCTGAGTC CACAGCAGGC AGTGAGCCTG GAAGCCTCAC CCCTGATAAG GAGAAGCCTT
841CGCAGATGAC AGCTGATAAC ACCCAGGCTG CTGCCACCAA GCAACCACTC GAAACTTCCG
901AGTACACCCT GAGTGTTGAG CCAGAAACTG ATAGTCTGCT GGGAGCCCCA GAAGTCACAG
961TGAGTGTCAG CACAGCTGTT CCAGCTGCCT CTGCCTTAAG TGATGAGTGG GATGACACCA
1021AATTAGAGAG TGTAAGCCGG ATAAGGACCC CCAAGCTTGG AGACAATGAA GAGACTCAGG
1081TGAGAACGGA GATGTCTCAG ACAGCACAAG TAAGCCATGA GGGTATGGAA GGAGGCCAGC
1141CTTGGACAGA GGCTGCACAG GTGGCTCTGG GGCTGCCTGA AGGGGAAACA CACACGGGCA
1201CAGCCCTGCT AATAGCGCAT GGGAATGAGA GATCACCTGC TTTCACTGAT CAAAGTTCCT
1261TTACCCCCAC AAGTCTGATG GAAGACATGA AAGTTTCCAT TGTGAACTTG CTCCAAAGTA
1321CGGGAGACTT CACGGAATCC ACCAAGGAAA ACGATGCCCT GTTTTTCTTA GAAACCACTG
1381TTTCTGTCTC TGTATATGAG TCTGAGGCAG ACCAACTGTT GGGAAATACA ATGAAAGACA
1441TCATCACTCA AGAGATGACA ACAGCTGTTC AAGAGCCAGA TGCCACTTTA TCCATGGTGA
1501CACAAGAGCA GGTTGCTACC CTCGAGCTTA TCAGAGACAG TGGCAAGACT GAGGAAGAAA
1561AGGAGGACCC CTCTCCTGTG TCTGACGTTC CTGGTGTTAC TCAGCTGTCA AGAAGATGGG
1621AGCCTCTGGC CACTACAATT TCAACTACAG TCGTCCCTTT GTCTTTTGAA GTTACTCCCA
1681CTGTGGAAGA ACAAATGGAC ACAGTCACAG GGCCAAATGA GGAGTTCACA CCAGTTCTGG
1741GATCTCCAGT GACACCTCCT GGAATAATGG TGGGGGAACC CAGCATTTCC CCTGCACTTC
1801CTGCTTTGGA GGCATCCTCT GAGAGAAGAA CTGTTGTTCC ATCTATTACT CGTGTTAATA
1861CAGCTGCCTC ATATGGCCTG GACCAACTTG AATCTGAAGA GGGAGAAGAA GATGAGGATG
1921AAGAGGATGA AGAAGATGAA GATGAAGAAG AGGAAGATGA GGAAGAAGAT GAGGAAGATA
1981AAGATGCAGA CTCGCTGGAT GAGGGCTTGG ATGGTGACAC TGAGCTGCCA GGTTTTACCC
2041TCCCTGGTAT CACATCCCAG GAACCAGGCT TAGAGGAGGG AAACATGGAC CTGTTGGAGG
2101GAGCTACCTA CCAGGTGCCA GATGCCCTCG AGTGGGAACA GCAGAATCAA GGCCTGGTGA
2161GAAGCTGGAT GGAAAAATTA AAAGACAAGG CTGGTTACAT GTCTGGGATG CTGGTGCCTG
2221TAGGGGTTGG GATAGCTGGA GCCTTGTTCA TCTTGGGAGC CCTCTACAGC ATTAAGGTTA
2281TGAATCGCCG AAGGAGAAAT GGCTTCAAAA GGCATAAAAG AAAGCAGAGA GAATTCAACA
2341GCATGCAAGA TCGAGTAATG CTCTTAGCCG ACAGCTCTGA AGATGAATTT TTGCCAACTT
2401TCTTGTACAA AGTTGGcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)