Transcript: Human NM_001320173.2

Homo sapiens armadillo like helical domain containing 4 (ARMH4), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-08-09
Taxon:
Homo sapiens (human)
Gene:
ARMH4 (145407)
Length:
2418
CDS:
196..2208

Additional Resources:

NCBI RefSeq record:
NM_001320173.2
NBCI Gene record:
ARMH4 (145407)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001320173.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000121752 CCATCTATTACTCGTGTTAAT pLKO.1 1966 CDS 100% 13.200 18.480 N ARMH4 n/a
2 TRCN0000144724 GAAGAACTGTTGTTCCATCTA pLKO.1 1952 CDS 100% 4.950 3.465 N ARMH4 n/a
3 TRCN0000140587 GCATCCTCTGAGAGAAGAACT pLKO.1 1939 CDS 100% 4.950 3.465 N ARMH4 n/a
4 TRCN0000139540 CGTGTTAATACAGCTGCCTCA pLKO.1 1978 CDS 100% 2.160 1.512 N ARMH4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001320173.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09619 pDONR223 100% 82.6% 80.6% None (many diffs) n/a
2 ccsbBroad304_09619 pLX_304 0% 82.6% 80.6% V5 (many diffs) n/a
3 TRCN0000480285 TGTAGCTGACGCTCAGAAAATGGG pLX_317 16.3% 82.6% 80.6% V5 (many diffs) n/a
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