Transcript: Human XR_943395.2

PREDICTED: Homo sapiens armadillo like helical domain containing 4 (ARMH4), transcript variant X5, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ARMH4 (145407)
Length:
9746
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_943395.2
NBCI Gene record:
ARMH4 (145407)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_943395.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000121752 CCATCTATTACTCGTGTTAAT pLKO.1 2058 3UTR 100% 13.200 18.480 N ARMH4 n/a
2 TRCN0000142720 CGAAGGAGAAATGGCTTCAAA pLKO.1 2508 3UTR 100% 5.625 3.938 N ARMH4 n/a
3 TRCN0000122652 GAGTGGGAACAGCAGAATCAA pLKO.1 2349 3UTR 100% 5.625 3.938 N ARMH4 n/a
4 TRCN0000144724 GAAGAACTGTTGTTCCATCTA pLKO.1 2044 3UTR 100% 4.950 3.465 N ARMH4 n/a
5 TRCN0000143231 GAATCTGAAGAGGGACAAGAA pLKO.1 2109 3UTR 100% 4.950 3.465 N ARMH4 n/a
6 TRCN0000140587 GCATCCTCTGAGAGAAGAACT pLKO.1 2031 3UTR 100% 4.950 3.465 N ARMH4 n/a
7 TRCN0000139540 CGTGTTAATACAGCTGCCTCA pLKO.1 2070 3UTR 100% 2.160 1.512 N ARMH4 n/a
8 TRCN0000140047 CCGAAGGAGAAATGGCTTCAA pLKO.1 2507 3UTR 100% 4.950 2.970 N ARMH4 n/a
9 TRCN0000144995 GAAGAGGATGAAGAAGATGAA pLKO.1 2139 3UTR 100% 4.950 2.970 N ARMH4 n/a
10 TRCN0000143538 GATGAGGATGAAGAGGATGAA pLKO.1 2130 3UTR 100% 4.950 2.970 N ARMH4 n/a
11 TRCN0000018931 GAAGAAGATGAAGATGAAGAA pLKO.1 2148 3UTR 100% 4.950 2.475 Y HMGB1 n/a
12 TRCN0000143232 GAAGAGGAAGATGAGGAAGAA pLKO.1 2166 3UTR 100% 4.950 2.475 Y ARMH4 n/a
13 TRCN0000145323 GAAGATGAAGAAGAGGAAGAT pLKO.1 2157 3UTR 100% 4.950 2.475 Y ARMH4 n/a
14 TRCN0000143206 GATGAGGAAGAAGATGAGGAA pLKO.1 2175 3UTR 100% 2.640 1.320 Y ARMH4 n/a
15 TRCN0000174457 CAACTTGAATCTGAAGAGGTA pLKO.1 2103 3UTR 100% 2.640 1.584 N 3632451O06Rik n/a
16 TRCN0000093082 GAAGATGAAGATGAAGAAGAA pLKO.1 2151 3UTR 100% 4.950 2.475 Y Gm5518 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_943395.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09619 pDONR223 100% 23.8% None (many diffs) n/a
2 ccsbBroad304_09619 pLX_304 0% 23.8% V5 (many diffs) n/a
3 TRCN0000480285 TGTAGCTGACGCTCAGAAAATGGG pLX_317 16.3% 23.8% V5 (many diffs) n/a
Download CSV