Construct: ORF ccsbBroadEn_09625
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016711.1_s300c1, BRDN0000395147
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OTOA (146183)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 146183 | OTOA | otoancorin | NM_144672.4 | 99.9% | 99.9% | 3074A>C |
| 2 | human | 146183 | OTOA | otoancorin | NM_001161683.2 | 92.7% | 92.1% | (many diffs) |
| 3 | human | 146183 | OTOA | otoancorin | NM_170664.3 | 71.4% | 71.2% | 0_1ins972;3_5delGTTinsCCA;2102A>C |
| 4 | human | 146183 | OTOA | otoancorin | XM_011545748.2 | 64.8% | 64.7% | 0_1ins1131;1943A>C;2287_2394del |
| 5 | human | 146183 | OTOA | otoancorin | XR_002957775.1 | 54.7% | (many diffs) | |
| 6 | human | 146183 | OTOA | otoancorin | XM_017022951.1 | 47.7% | 47.6% | 0_1ins1734;1340A>C;1684_1791del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 3486
- ORF length:
- 3417
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTCTCAGGAA CCTACGACAT ACTCCCTTTT CCTATTCCTT TTTCTGAGCC 121 ATGGAGTGTC GAGTTATACA GTGCCAAATT CCAGGCAGGA TTTGCATCCA TTGTTGCAAA 181 ACATGGCGGA AGAAATAATA GATGGAAGCT ATCTGAATGC ACTGCTGGAT CTCATACAGT 241 TTCAAAGCTC CCACGTGTGG ACGGATGACC TGTCCCACAG AGTCCTGGCC TATCTGAATT 301 CCCGGAATGT TGCCTTCACC ATCCCCAGCC TGCAGGCAGC CGTGGAAAAC CACCTGGAGC 361 AGCGTCTGCA CCAGCCCCAG AAGCTGCTGG AGGACCTGAG GAAGACAGAC GCCCAGCAGT 421 TCCGCACTGC CATGAAATGC CTCTTAGAAG ACAAGAAGGA CGGCTTGGAC CTGAAAGACA 481 TCATCATCGA CTTAGGAGAG ATTCGAGAAC GAGCCTTGCA GAGCCCTGGC GTGAACCGCA 541 GCCTGTTTCT CATCACACTG GAGAGGTGTT TCCAGATGCT GAACTCCCTG GAGTGTGTGG 601 AGATCCTGGG CAAGGTGCTG AGGGGGTCCT CAGGGAGCTT TCTCCAGCCA GACATCACAG 661 AGCGGCTCCC TCGGGACCTG CGCGAGGATG CCTTTAAGAA CCTATCTGCA GTGTTCAAAG 721 ATCTCTACGA CAAAACCTCG GCTCATTCCC AGAGAGCTCT CTATTCCTGG ATGACTGGAA 781 TACTGCAGAC ATCCTCCAAT GCCACTGATG ACTCTGCTTC ATGGGTCAGT GCGGAACACT 841 TATGGGTTTT GGGCAGATAC ATGGTTCACC TATCGTTTGA AGAAATTACG AAAATTAGTC 901 CTATAGAAAT TGGGCTGTTT ATCAGCTATG ACAACGCCAC CAAGCAGCTG GACATGGTCT 961 ATGACATCAC ACCTGAGCTG GCCCAGGCGT TTCTGGAGAG GATCAGCTCC TCCAACTTTA 1021 ACATGAGGAA TACCTCCACC ATCCACAGGC TGGGGCTGCT GGTTTGTTTC TACAATGACC 1081 TGGAATTGCT GGATGCCACT GTGGCTCAAG TCCTGCTTTA CCAGATGATC AAGTGCAGCC 1141 ACCTGAGGGG CTTCCAGGCT GGCGTCCAGA AGCTCAAAGC AGAACTCCTG GACATTGCCA 1201 TGGAGAACCA GACCCTCAAT GAGACCCTGG GTTCTTTGTC GGATGCAGTT GTAGGTTTGA 1261 CCTACAGCCA ACTGGAATCC CTCTCCCCCG AGGCTGTGCA CGGAGCCATC TCCACCCTCA 1321 ACCAGGTCTC AGGTTGGGCC AAGAGCCAGG TCATCATCTT GTCTGCCAAA TACTTGGCCC 1381 ATGAGAAGGT GCTGTCTTTC TACAATGTCA GCCAGATGGG CGCACTGCTG GCTGGGGTCA 1441 GCACCCAGGC CTTCTGCAGC ATGAAACGCA AGGACATCTC GCAGGTCCTG AGAAGTGCCG 1501 TCTCCCAGTA TGTATCCGAC TTGTCACCTG CCCAGCAGCA AGGTATCCTC AGCAAGATGG 1561 TCCAAGCGGA AGACACTGCC CCAGGCATCG TGGAGATACA AGGGGCTTTC TTTAAGGAAG 1621 TGTCTCTCTT TGATTTAAGG AGGCAACCTG GATTCAACTC TACAGTCCTG AAGGATAAGG 1681 AACTTGGAAG GAGCCAGGCT CTGTTCCTGT ATGAGCTTCT GTTAAAGACC ACCAGAAGGC 1741 CTGAGGAGCT TTTGAGTGCT GGGCAGCTGG TCAAAGGCGT GACCTGCTCA CACATTGATG 1801 CCATGAGCAC TGACTTCTTT CTGGCCCATT TCCAGGATTT TCAGAACAAC TTCGCCCTGC 1861 TTTCACCCTA TCAGGTTAAT TGTTTGGCGT GGAAATACTG GGAAGTTTCC AGATTGTCTA 1921 TGCCACCTTT CCTCTTGGCT GCACTCCCGG CCCGCTACCT GGCTTCTGTC CCAGCCTCCC 1981 AGTGTGTGCC CTTTCTGATC AGCCTGGGGA AGAGCTGGTT GGACTCCTTG GTTTTAGATT 2041 CCCACAAAAA GACTTCAGTC CTCAGGAAAG TGCAGCAGTG CCTGGACGAC TCCATTGCTG 2101 ATGAGTACAC TGTGGACATC ATGGGGAACC TGCTGTGTCA CTTGCCGGCA GCCATCATCG 2161 ACAGGGGGAT CTCCCCCAGG GCTTGGGCGA CTGCTCTACA CGGCCTCAGA GACTGCCCAG 2221 ACCTCAACCC TGAGCAAAAG GCTGCAGTGA GGCTCAAGCT CCTGGGACAG TATGGACTCC 2281 CTCAGCACTG GACAGCCGAG ACCACGAAGG ACTTGGGACC CTTTCTAGTA CTTTTCTCAG 2341 GAGATGAATT AAGCTCTATA GCCACAAAGT TTCCTGAGAT CCTTCTGCAA GCAGCTTCCA 2401 AGATGGCCAG GACCCTGCCC ACTAAAGAAT TCCTCTGGGC TGTCTTTCAG TCTGTTCGGA 2461 ACAGCAGTGA TAAGATCCCC AGCTATGACC CTATGCCTGG TTGCCATGGA GTCGTGGCCC 2521 CCTCTTCTGA TGACATCTTC AAGTTGGCCG AAGCCAACGC CTGCTGGGCC CTGGAGGACC 2581 TGCGGTGCAT GGAGGAAGAC ACATTCATCA GGACCGTGGA ACTGCTGGGA GCTGTCCAGG 2641 GTTTCAGCCG GCCTCAGCTG ATGACCCTGA AGGAGAAAGC AATACAGGTT TGGGACATGC 2701 CATCTTACTG GAGAGAACAC CATATCGTCT CCCTGGGGCG CATTGCTCTG GCTCTTAATG 2761 AGAGTGAGCT GGAGCAGCTG GACCTCAGCT CCATAGACAC TGTGGCTTCC CTAAGCTGGC 2821 AAACAGAATG GACCCCGGGA CAGGCTGAAT CCATTTTGCA AGGGTACCTG GATGATTCAG 2881 GATACAGTAT CCAGGACCTG AAGAGCTTTC ATTTGGTAGG ACTTGGTGCA ACCCTGTGTG 2941 CTATAAACAT CACTGAAATC CCACTTATAA AGATCTCAGA ATTCAGGGTG GTAGTGGCCA 3001 GAATTGGGAC CCTGCTCTGC AGCACACATG TCTTAGCCGA GTTTAAGAGG AAGGCTGAAG 3061 TTGTGTTTGG GGATCCCACT GAGTGGACCA GTTCTGTCTT GCAGGAGCTT GGGACCATTG 3121 CAGCTGGATT AACTAAGGCA GCGCTCCGGA TGCTTGACAA GGATTTGATG CCATATTTCC 3181 AGCCATCAGC AATAAAATGC CTTCCTGATG AGATATTCAA AGAGCTGTCC GCGGAGCAGA 3241 TCGCCTCCCT GGGTCCGGAG AACGCCGCGG CGGTGACCCA CGCCCAGCGC CGGCGGCTCA 3301 GTCCACTGCA GCTGCAGAGC CTCCAGCAGG CGCTAGATGG CGCCAAGACT CACTCCTGGC 3361 AGGACGCGCC CGCTAGCGCC GGTCCCACTA GAACCTCATC CTCGCGTTCT CCCGCAGGAG 3421 CTCTCCAGTC GTGGGGTCTT TGGCTTGGTT GTCCCCTGCT GGTTCTAATG GCCAAGCTCC 3481 TGTGGTTGCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 3541 gttgcaacga ac