Construct: ORF ccsbBroadEn_09647

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008496.1_s300c1, BRDN0000396407
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ANKRD29 (147463)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 147463 ANKRD29 ankyrin repeat domain 29 NM_173505.4 99.7% 99.6% 335G>A;903C>T
2 human 147463 ANKRD29 ankyrin repeat domain 29 NM_001308238.2 88.8% 88.7% 335G>A;720_721ins99;804C>T
3 human 147463 ANKRD29 ankyrin repeat domain 29 XM_011525830.2 88.8% 88.7% 231_232ins99;236G>A;804C>T
4 human 147463 ANKRD29 ankyrin repeat domain 29 XM_011525831.3 85.6% 85% (many diffs)
5 human 147463 ANKRD29 ankyrin repeat domain 29 XM_011525832.3 83.1% 83% 0_1ins150;185G>A;753C>T
6 human 147463 ANKRD29 ankyrin repeat domain 29 XM_017025561.1 77.8% 77.7% (many diffs)
7 human 147463 ANKRD29 ankyrin repeat domain 29 XR_935201.2 77.3% (many diffs)
8 human 147463 ANKRD29 ankyrin repeat domain 29 XR_935198.1 65.3% (many diffs)
9 human 147463 ANKRD29 ankyrin repeat domain 29 XR_935204.1 65% (many diffs)
10 human 147463 ANKRD29 ankyrin repeat domain 29 XR_935199.1 27.1% (many diffs)
11 human 147463 ANKRD29 ankyrin repeat domain 29 XR_935195.1 26.7% (many diffs)
12 human 147463 ANKRD29 ankyrin repeat domain 29 XR_935196.1 26.1% (many diffs)
13 human 147463 ANKRD29 ankyrin repeat domain 29 XR_935200.1 26% (many diffs)
14 human 147463 ANKRD29 ankyrin repeat domain 29 XR_935202.1 24.1% (many diffs)
15 human 147463 ANKRD29 ankyrin repeat domain 29 XR_001753147.1 23.5% (many diffs)
16 human 147463 ANKRD29 ankyrin repeat domain 29 XR_935197.1 23.3% (many diffs)
17 human 147463 ANKRD29 ankyrin repeat domain 29 XR_001753143.1 23.2% (many diffs)
18 human 147463 ANKRD29 ankyrin repeat domain 29 XR_935203.1 23.1% (many diffs)
19 human 147463 ANKRD29 ankyrin repeat domain 29 XR_001753144.1 21.1% (many diffs)
20 human 147463 ANKRD29 ankyrin repeat domain 29 XR_001753145.1 20.7% (many diffs)
21 human 147463 ANKRD29 ankyrin repeat domain 29 XR_001753146.1 20.6% (many diffs)
22 mouse 225187 Ankrd29 ankyrin repeat domain 29 NM_001190371.1 87.1% 93.2% (many diffs)
23 mouse 225187 Ankrd29 ankyrin repeat domain 29 XM_017317871.1 75.5% 67% (many diffs)
24 mouse 225187 Ankrd29 ankyrin repeat domain 29 XM_017317867.1 70.6% 75.5% (many diffs)
25 mouse 225187 Ankrd29 ankyrin repeat domain 29 XM_017317870.1 67.4% 72% (many diffs)
26 mouse 225187 Ankrd29 ankyrin repeat domain 29 XM_017317868.1 66.5% 71% (many diffs)
27 mouse 225187 Ankrd29 ankyrin repeat domain 29 XM_017317869.1 63.7% 68% (many diffs)
28 mouse 225187 Ankrd29 ankyrin repeat domain 29 XM_017317873.1 29.1% 29.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
969
ORF length:
903
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTG CAGGATGTCC TTCAAGAAGG AAACTCCACT TGCCAATGCT GCATTCTGGG
121CAGCCAGGAG AGGAAACCTG GCGCTGCTGA AGCTGCTGTT GAACAGCGGC CGGGTGGACG
181TGGACTGCAG AGACAGCCAT GGCACCACAC TCCTGATGGT TGCTGCCTAC GCTGGCCACA
241TAGACTGTGT GAGGGAACTG GTTCTGCAAG GAGCAGACAT CAATCTCCAG AGAGAGTCAG
301GTACAACTGC CCTATTCTTT GCCGCCCAGC AAGGCCATAA TGATGTCGTG AGATTTCTCT
361TTGGATTTGG AGCATCCACT GAATTTAGGA CCAAAGACGA GGGCACCGCC CTGTTGGCTG
421CCAGTCAGTA CGGGCACATG CAGGTGGTGG AGACCTTGCT GAAGCACGGA GCAAACATCC
481ATGACCAACT TTATGATGGA GCCACTGCCC TCTTCCTAGC TGCCCAAGGT GGTTACTTGG
541ATGTTATTCG ATTACTGCTG GCTTCAGGAG CAAAAGTCAA CCAGCCAAGG CAGGACGGGA
601CAGCGCCCCT GTGGATCGCG TCCCAGATGG GCCACAGCGA GGTGGTGCGG GTGATGCTGC
661TGCGCGGAGC CGACCGCGAC GCTGCGCGGA ACGATGGCAC AACAGCATTA TTGAAAGCAG
721CCAACAAAGG GTATAATGAT GTCATAAAAG AGTTGCTTAA ATTCTCACCC ACTCTTGGTA
781TTTTGAAGAA TGGGACATCA GCGCTCCATG CAGCAGTGCT CAGTGGAAAC ATTAAAACAG
841TTGCGCTGCT CCTAGAAGCA GGGGCAGACC CATCCCTGAG AAACAAGGCC AATGAACTTC
901CGGCAGAACT AACCAAAAAT GAACGTATAT TGCGTCTCCT GAGAAGTAAA GAAGGTCCCA
961GAAAGAGTTA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa
1021tttgttgcaa cgaac

Download FASTA (ORF) (Full)

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