Construct: ORF ccsbBroadEn_09647
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008496.1_s300c1, BRDN0000396407
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ANKRD29 (147463)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 147463 | ANKRD29 | ankyrin repeat domain 29 | NM_173505.4 | 99.7% | 99.6% | 335G>A;903C>T |
| 2 | human | 147463 | ANKRD29 | ankyrin repeat domain 29 | NM_001308238.2 | 88.8% | 88.7% | 335G>A;720_721ins99;804C>T |
| 3 | human | 147463 | ANKRD29 | ankyrin repeat domain 29 | XM_011525830.2 | 88.8% | 88.7% | 231_232ins99;236G>A;804C>T |
| 4 | human | 147463 | ANKRD29 | ankyrin repeat domain 29 | XM_011525831.3 | 85.6% | 85% | (many diffs) |
| 5 | human | 147463 | ANKRD29 | ankyrin repeat domain 29 | XM_011525832.3 | 83.1% | 83% | 0_1ins150;185G>A;753C>T |
| 6 | human | 147463 | ANKRD29 | ankyrin repeat domain 29 | XM_017025561.1 | 77.8% | 77.7% | (many diffs) |
| 7 | human | 147463 | ANKRD29 | ankyrin repeat domain 29 | XR_935201.2 | 77.3% | (many diffs) | |
| 8 | human | 147463 | ANKRD29 | ankyrin repeat domain 29 | XR_935198.1 | 65.3% | (many diffs) | |
| 9 | human | 147463 | ANKRD29 | ankyrin repeat domain 29 | XR_935204.1 | 65% | (many diffs) | |
| 10 | human | 147463 | ANKRD29 | ankyrin repeat domain 29 | XR_935199.1 | 27.1% | (many diffs) | |
| 11 | human | 147463 | ANKRD29 | ankyrin repeat domain 29 | XR_935195.1 | 26.7% | (many diffs) | |
| 12 | human | 147463 | ANKRD29 | ankyrin repeat domain 29 | XR_935196.1 | 26.1% | (many diffs) | |
| 13 | human | 147463 | ANKRD29 | ankyrin repeat domain 29 | XR_935200.1 | 26% | (many diffs) | |
| 14 | human | 147463 | ANKRD29 | ankyrin repeat domain 29 | XR_935202.1 | 24.1% | (many diffs) | |
| 15 | human | 147463 | ANKRD29 | ankyrin repeat domain 29 | XR_001753147.1 | 23.5% | (many diffs) | |
| 16 | human | 147463 | ANKRD29 | ankyrin repeat domain 29 | XR_935197.1 | 23.3% | (many diffs) | |
| 17 | human | 147463 | ANKRD29 | ankyrin repeat domain 29 | XR_001753143.1 | 23.2% | (many diffs) | |
| 18 | human | 147463 | ANKRD29 | ankyrin repeat domain 29 | XR_935203.1 | 23.1% | (many diffs) | |
| 19 | human | 147463 | ANKRD29 | ankyrin repeat domain 29 | XR_001753144.1 | 21.1% | (many diffs) | |
| 20 | human | 147463 | ANKRD29 | ankyrin repeat domain 29 | XR_001753145.1 | 20.7% | (many diffs) | |
| 21 | human | 147463 | ANKRD29 | ankyrin repeat domain 29 | XR_001753146.1 | 20.6% | (many diffs) | |
| 22 | mouse | 225187 | Ankrd29 | ankyrin repeat domain 29 | NM_001190371.1 | 87.1% | 93.2% | (many diffs) |
| 23 | mouse | 225187 | Ankrd29 | ankyrin repeat domain 29 | XM_017317871.1 | 75.5% | 67% | (many diffs) |
| 24 | mouse | 225187 | Ankrd29 | ankyrin repeat domain 29 | XM_017317867.1 | 70.6% | 75.5% | (many diffs) |
| 25 | mouse | 225187 | Ankrd29 | ankyrin repeat domain 29 | XM_017317870.1 | 67.4% | 72% | (many diffs) |
| 26 | mouse | 225187 | Ankrd29 | ankyrin repeat domain 29 | XM_017317868.1 | 66.5% | 71% | (many diffs) |
| 27 | mouse | 225187 | Ankrd29 | ankyrin repeat domain 29 | XM_017317869.1 | 63.7% | 68% | (many diffs) |
| 28 | mouse | 225187 | Ankrd29 | ankyrin repeat domain 29 | XM_017317873.1 | 29.1% | 29.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 969
- ORF length:
- 903
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTG CAGGATGTCC TTCAAGAAGG AAACTCCACT TGCCAATGCT GCATTCTGGG 121 CAGCCAGGAG AGGAAACCTG GCGCTGCTGA AGCTGCTGTT GAACAGCGGC CGGGTGGACG 181 TGGACTGCAG AGACAGCCAT GGCACCACAC TCCTGATGGT TGCTGCCTAC GCTGGCCACA 241 TAGACTGTGT GAGGGAACTG GTTCTGCAAG GAGCAGACAT CAATCTCCAG AGAGAGTCAG 301 GTACAACTGC CCTATTCTTT GCCGCCCAGC AAGGCCATAA TGATGTCGTG AGATTTCTCT 361 TTGGATTTGG AGCATCCACT GAATTTAGGA CCAAAGACGA GGGCACCGCC CTGTTGGCTG 421 CCAGTCAGTA CGGGCACATG CAGGTGGTGG AGACCTTGCT GAAGCACGGA GCAAACATCC 481 ATGACCAACT TTATGATGGA GCCACTGCCC TCTTCCTAGC TGCCCAAGGT GGTTACTTGG 541 ATGTTATTCG ATTACTGCTG GCTTCAGGAG CAAAAGTCAA CCAGCCAAGG CAGGACGGGA 601 CAGCGCCCCT GTGGATCGCG TCCCAGATGG GCCACAGCGA GGTGGTGCGG GTGATGCTGC 661 TGCGCGGAGC CGACCGCGAC GCTGCGCGGA ACGATGGCAC AACAGCATTA TTGAAAGCAG 721 CCAACAAAGG GTATAATGAT GTCATAAAAG AGTTGCTTAA ATTCTCACCC ACTCTTGGTA 781 TTTTGAAGAA TGGGACATCA GCGCTCCATG CAGCAGTGCT CAGTGGAAAC ATTAAAACAG 841 TTGCGCTGCT CCTAGAAGCA GGGGCAGACC CATCCCTGAG AAACAAGGCC AATGAACTTC 901 CGGCAGAACT AACCAAAAAT GAACGTATAT TGCGTCTCCT GAGAAGTAAA GAAGGTCCCA 961 GAAAGAGTTA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 1021 tttgttgcaa cgaac