Transcript: Human XM_011525831.3

PREDICTED: Homo sapiens ankyrin repeat domain 29 (ANKRD29), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ANKRD29 (147463)
Length:
5939
CDS:
2860..3639

Additional Resources:

NCBI RefSeq record:
XM_011525831.3
NBCI Gene record:
ANKRD29 (147463)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011525831.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000285001 ACGATGGCACAACAGCATTAT pLKO_005 3359 CDS 100% 13.200 18.480 N ANKRD29 n/a
2 TRCN0000005436 GTCAGGTACAACTGCCCTATT pLKO.1 2964 CDS 100% 10.800 15.120 N ANKRD29 n/a
3 TRCN0000005433 GCTCTATTGTTGGGAATCTAT pLKO.1 4436 3UTR 100% 5.625 7.875 N ANKRD29 n/a
4 TRCN0000273505 TACTTGGATGTTATTCGATTA pLKO_005 3202 CDS 100% 10.800 8.640 N ANKRD29 n/a
5 TRCN0000273558 AGCTAACTTAGCTCCATATTT pLKO_005 3634 CDS 100% 15.000 10.500 N ANKRD29 n/a
6 TRCN0000273560 TGTATGTCATTCCAGTATAAA pLKO_005 4111 3UTR 100% 15.000 10.500 N ANKRD29 n/a
7 TRCN0000005437 CAAAGGGTATAATGATGTCAT pLKO.1 3393 CDS 100% 4.950 3.465 N ANKRD29 n/a
8 TRCN0000005434 GCCATAATGATGTCGTGAGAT pLKO.1 3002 CDS 100% 4.950 3.465 N ANKRD29 n/a
9 TRCN0000005435 TCCCTGAGAAACAAGGCCAAT pLKO.1 3541 CDS 100% 4.050 2.835 N ANKRD29 n/a
10 TRCN0000273559 TCCCTGAGAAACAAGGCCAAT pLKO_005 3541 CDS 100% 4.050 2.835 N ANKRD29 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011525831.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09647 pDONR223 100% 85.6% 85% None (many diffs) n/a
2 ccsbBroad304_09647 pLX_304 0% 85.6% 85% V5 (many diffs) n/a
3 TRCN0000470863 CACTCTGCGTTCGAGAACACGTGC pLX_317 49% 85.6% 85% V5 (many diffs) n/a
Download CSV