Construct: ORF ccsbBroadEn_09684

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014392.1_s300c1, BRDN0000392744
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
IGSF11 (152404)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 152404 IGSF11 immunoglobulin superfamily ... NM_001353320.2 99.8% 99.5% 112C>A;1282T>A
2 human 152404 IGSF11 immunoglobulin superfamily ... NM_152538.4 99.8% 99.5% 112C>A;1282T>A
3 human 152404 IGSF11 immunoglobulin superfamily ... XM_011512469.1 99.8% 99.5% 112C>A;1282T>A
4 human 152404 IGSF11 immunoglobulin superfamily ... NM_001015887.3 97.4% 95.8% (many diffs)
5 human 152404 IGSF11 immunoglobulin superfamily ... XM_024453376.1 95% 93.4% (many diffs)
6 human 152404 IGSF11 immunoglobulin superfamily ... NM_001353322.2 94.2% 93.7% 112C>A;628_629ins72;1210T>A
7 human 152404 IGSF11 immunoglobulin superfamily ... NM_001353321.2 91.9% 90.1% (many diffs)
8 human 152404 IGSF11 immunoglobulin superfamily ... NM_001353323.2 91% 89.1% (many diffs)
9 human 152404 IGSF11 immunoglobulin superfamily ... XM_011512463.1 89.4% 88.9% 50_199del;262C>A;1432T>A
10 human 152404 IGSF11 immunoglobulin superfamily ... XM_011512464.2 89.4% 88.9% 50_199del;262C>A;1432T>A
11 human 152404 IGSF11 immunoglobulin superfamily ... XM_011512465.2 89.4% 88.9% 50_199del;262C>A;1432T>A
12 human 152404 IGSF11 immunoglobulin superfamily ... NM_001353318.2 87.5% 86% (many diffs)
13 human 152404 IGSF11 immunoglobulin superfamily ... NM_001353325.2 86.4% 86.2% 0_1ins174;1108T>A
14 human 152404 IGSF11 immunoglobulin superfamily ... XM_017005789.1 86.4% 86.2% 0_1ins174;1108T>A
15 human 152404 IGSF11 immunoglobulin superfamily ... NM_001353324.2 85.5% 83.9% (many diffs)
16 human 152404 IGSF11 immunoglobulin superfamily ... XM_011512466.2 82.5% 80.8% (many diffs)
17 human 152404 IGSF11 immunoglobulin superfamily ... NM_001353319.2 81.7% 80% (many diffs)
18 human 152404 IGSF11 immunoglobulin superfamily ... NM_001353326.2 80.8% 80.4% 0_1ins174;454_455ins72;1036T>A
19 human 152404 IGSF11 immunoglobulin superfamily ... XM_011512471.3 76.8% 75.2% (many diffs)
20 human 152404 IGSF11 immunoglobulin superfamily ... XM_024453377.1 57.4% 54.7% (many diffs)
21 human 152404 IGSF11 immunoglobulin superfamily ... XM_011512474.3 51.7% 48.8% (many diffs)
22 mouse 207683 Igsf11 immunoglobulin superfamily,... NM_170599.2 84.9% 85.4% (many diffs)
23 mouse 207683 Igsf11 immunoglobulin superfamily,... XM_006521892.2 83.8% 86.4% (many diffs)
24 mouse 207683 Igsf11 immunoglobulin superfamily,... XM_006521893.2 83.6% 86.5% (many diffs)
25 mouse 207683 Igsf11 immunoglobulin superfamily,... XM_011245851.1 74.4% 77.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1356
ORF length:
1290
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC TCTGGTGGAA CTTTTGCTCT GGTGGAACTG CTTTTCTAGA ACTGGTGTTG
121CAGCATCCCT GGAAGTGTCA GAGAGCCCTG GGAGTATCCA GGTGGCCCGG GGTCAGACAG
181CAGTCCTGCC CTGCACTTTC ACTACCAGCG CTGCCCTCAT TAACCTCAAT GTCATTTGGA
241TGGTCACTCC TCTCTCCAAT GCCAACCAAC CTGAACAGGT CATCCTGTAT CAGGGTGGAC
301AGATGTTTGA TGGTGCCCCC CGGTTCCACG GTAGGGTAGG ATTTACAGGC ACCATGCCAG
361CTACCAATGT CTCTATCTTC ATTAATAACA CTCAGTTATC AGACACTGGC ACCTACCAGT
421GCCTGGTCAA CAACCTTCCA GACATAGGGG GCAGGAACAT TGGGGTCACC GGTCTCACAG
481TGTTAGTTCC CCCTTCTGCC CCACACTGCC AAATCCAAGG ATCCCAGGAT ATTGGCAGCG
541ATGTCATCCT GCTCTGTAGC TCAGAGGAAG GCATTCCTCG ACCAACTTAC CTTTGGGAGA
601AGTTAGACAA TACCCTCAAA CTACCTCCAA CAGCTACTCA GGACCAGGTC CAGGGAACAG
661TCACCATCCG GAACATCAGT GCCCTGTCTT CAGGTTTGTA CCAGTGCGTG GCTTCTAATG
721CTATTGGAAC CAGCACCTGT CTTCTGGATC TCCAGGTTAT TTCACCCCAG CCCAGGAACA
781TTGGACTAAT AGCTGGAGCC ATTGGCACTG GTGCAGTTAT TATCATTTTT TGCATTGCAC
841TAATTTTAGG GGCATTCTTT TACTGGAGAA GCAAAAATAA AGAGGAGGAA GAAGAAGAAA
901TTCCTAATGA AATAAGAGAG GATGATCTTC CACCCAAGTG TTCTTCTGCC AAAGCATTTC
961ACACTGAGAT TTCCTCCTCG GACAACAACA CACTAACCTC TTCCAATGCC TACAACAGTC
1021GATACTGGAG CAACAATCCA AAAGTTCATA GAAACACAGA GTCAGTCAGC CACTTCAGTG
1081ACTTGGGCCA ATCTTTCTCT TTCCACTCAG GCAATGCCAA CATACCATCC ATTTATGCTA
1141ATGGGACCCA TCTGGTCCCG GGTCAACATA AGACTCTGGT AGTGACAGCC AACAGAGGGT
1201CATCACCACA GGTGATGTCC AGGAGCAATG GCTCAGTCAG TAGGAAGCCT CGGCCTCCAC
1261ACACTCATTC CTACACCATC AGCCACGCAA CACTGGAACG AATTGGTGCA GTACCTGTCA
1321TGGTACCAGC CCAGAGTCGG GCCGGGACCT TGGTATACCC AACTTTCTTG TACAAAGTtg
1381gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)