Construct: ORF ccsbBroadEn_09861

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015326.1_s300c1, BRDN0000393214
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FAM13C (220965)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 220965 FAM13C family with sequence simila... NM_198215.4 99.9% 99.8% 245C>A
2 human 220965 FAM13C family with sequence simila... XM_005269618.4 99.7% 99.6% 245C>A;1332_1333insCAG
3 human 220965 FAM13C family with sequence simila... NM_001347852.1 94.4% 92.5% (many diffs)
4 human 220965 FAM13C family with sequence simila... NM_001347849.1 94.2% 92.3% (many diffs)
5 human 220965 FAM13C family with sequence simila... NM_001143773.1 85.8% 85.8% 0_1ins249
6 human 220965 FAM13C family with sequence simila... NM_001347840.1 85.8% 85.8% 0_1ins249
7 human 220965 FAM13C family with sequence simila... NM_001347847.1 85.8% 85.8% 0_1ins249
8 human 220965 FAM13C family with sequence simila... XM_006717702.3 85.8% 85.8% 0_1ins249
9 human 220965 FAM13C family with sequence simila... NM_001166698.1 85.6% 85.6% 0_1ins249;1083_1084insCAG
10 human 220965 FAM13C family with sequence simila... NM_001347842.1 85.6% 85.6% 0_1ins249;1083_1084insCAG
11 human 220965 FAM13C family with sequence simila... NM_001347844.1 85.6% 85.6% 0_1ins249;1083_1084insCAG
12 human 220965 FAM13C family with sequence simila... XM_017015886.1 85.6% 85.6% 0_1ins249;1083_1084insCAG
13 human 220965 FAM13C family with sequence simila... XM_017015889.1 85.6% 85.6% 0_1ins249;1083_1084insCAG
14 human 220965 FAM13C family with sequence simila... XM_011539490.2 83.5% 82.2% (many diffs)
15 human 220965 FAM13C family with sequence simila... XM_011539491.2 83.5% 82.2% (many diffs)
16 human 220965 FAM13C family with sequence simila... NM_001347848.1 83.3% 82% (many diffs)
17 human 220965 FAM13C family with sequence simila... NM_001347850.1 83.3% 82% (many diffs)
18 human 220965 FAM13C family with sequence simila... NM_001001971.2 83.1% 83% 245C>A;941_942ins294
19 human 220965 FAM13C family with sequence simila... XM_005269619.4 83% 82.9% 245C>A;941_942ins294;1038_1039insCAG
20 human 220965 FAM13C family with sequence simila... NM_001347846.1 80.5% 78.7% (many diffs)
21 human 220965 FAM13C family with sequence simila... NM_001347851.1 80.5% 78.7% (many diffs)
22 human 220965 FAM13C family with sequence simila... XM_017015891.1 69% 69% 0_1ins249;692_693ins294
23 human 220965 FAM13C family with sequence simila... NM_001347845.1 68.8% 68.8% 0_1ins249;692_693ins294;789_790insCAG
24 human 220965 FAM13C family with sequence simila... NM_001347843.1 66.7% 65.4% (many diffs)
25 human 220965 FAM13C family with sequence simila... XM_024447879.1 66.7% 65.4% (many diffs)
26 human 220965 FAM13C family with sequence simila... XM_024447880.1 54.5% 54.5% 0_1ins798
27 human 220965 FAM13C family with sequence simila... XM_024447881.1 54.3% 54.3% 0_1ins798;534_535insCAG
28 mouse 71721 Fam13c family with sequence simila... NM_001143777.1 70.2% 71.4% (many diffs)
29 mouse 71721 Fam13c family with sequence simila... XM_017314101.1 70.2% 71.4% (many diffs)
30 mouse 71721 Fam13c family with sequence simila... XM_017314102.1 70.1% 71.2% (many diffs)
31 mouse 71721 Fam13c family with sequence simila... XM_006514150.2 55.6% 57.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1821
ORF length:
1755
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTT TTCTTGTTTC TGTTTCAGCC TTCAGGATAA TTCCTTCAGC AGCACCACTG
121TAACAGAGTG TGACGAAGAT CCAGTCTCTC TACATGAAGA CCAGACTGAT TGCTCCAGTC
181TCAGAGATGA AAACAATAAA GAGAACTACC CCGACGCAGG GGCTCTGGTA GAAGAGCACG
241CGCCGCCCTC TTGGGAGCCG CAGCAGCAGA ATGTAGAGGC GACCGTGCTG GTGGACAGCG
301TATTGCGACA CAGCATGGGC AACTTCAAGT CCAGGAAGCC CAAGTCCATC TTCAAAGCGG
361AGAGCGGGAG GAGCCACGGA GAAAGTCAGG AGACAGAGCA TGTGGTATCC AGCCAGTCAG
421AGTGTCAGGT GAGAGCAGGA ACACCAGCTC ATGAGAGTCC ACAAAACAAT GCCTTCAAGT
481GCCAAGAAAC AGTGCGACTT CAACCAAGAA TAGACCAGAG GACTGCCATT TCGCCAAAGG
541ATGCTTTTGA AACTCGGCAG GACTTAAATG AGGAAGAAGC TGCTCAGGTG CATGGAGTCA
601AGGACCCGGC GCCAGCATCA ACCCAGAGCG TGCTTGCCGA TGGGACAGAT TCTGCAGACC
661CCTCACCAGT CCACAAAGAT GGGCAGAATG AGGCCGACAG TGCACCAGAA GACCTCCACT
721CTGTGGGGAC CAGCAGGCTG CTCTATCACA TCACTGATGG TGATAACCCA CTGCTGTCGC
781CACGATGCTC CATCTTCAGC CAAAGCCAGA GATTCAACTT AGACCCCGAG TCAGCCCCAT
841CTCCACCCAG CACTCAGCAG TTTATGATGC CGCGGAGTTC TTCACGCTGC AGCTGTGGAG
901ATGGCAAGGA GCCACAGACC ATCACCCAGC TCACCAAGCA CATCCAGAGC CTCAAGCGGA
961AAATTCGGAA ATTTGAAGAA AAATTTGAAC AAGAAAAGAA ATACCGGCCT TCACATGGTG
1021ACAAGACTTC TAATCCTGAA GTCCTGAAAT GGATGAATGA TTTGGCTAAA GGTCGTAAAC
1081AGCTCAAAGA ACTAAAGCTA AAGCTGTCAG AAGAACAAGG GAGTGCTCCC AAAGGTCCAC
1141CTAGAAACCT GTTGTGTGAG CAACCCACAG TCCCCAGAGA AAATGGGAAA CCGGAAGCTG
1201CGGGCCCGGA GCCAAGCTCC TCTGGAGAAG AGACTCCAGA TGCTGCCTTG ACATGCCTGA
1261AGGAGAGAAG AGAGCAACTT CCTCCCCAGG AGGATTCTAA GGTAACTAAG CAAGACAAGA
1321ACCTCATAAA GCCGCTTTAT GACCGATACA GAATTATCAA GCAAATCTTG TCAACACCTT
1381CCCTTATTCC AACAATTCAG GAGGAAGAGG ACTCTGATGA AGACCGTCCA CAGGGAAGCC
1441AACAACCTTC TTTGGCAGAT CCAGCATCTC ACCTTCCTGT TGGTGACCAC CTCACCTACT
1501CTAATGAGAC TGAGCCTGTT AGGGCCCTTT TACCAGATGA AAAGAAAGAA GTAAAACCAC
1561CAGCTCTCTC CATGTCTAAT TTACATGAGG CTACCATGCC TGTACTTCTT GACCATCTCC
1621GAGAAACTAG GGCTGACAAG AAGAGACTGC GGAAAGCCTT AAGAGAATTT GAAGAACAGT
1681TTTTTAAACA AACAGGAAGA AGTCCACAAA AGGAAGATAG GATACCAATG GCAGATGAGT
1741ATTATGAATA TAAGCACATA AAAGCCAAAC TGAGACTATT AGAGGTCCTC ATCAGCAAGC
1801AAGATGTGGC CAAAACTATT TGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
1861attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)