Construct: ORF ccsbBroadEn_09905

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011360.1_s300c1, BRDN0000386351
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CBARP (255057)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 255057 CBARP CACN subunit beta associate... NM_152769.3 98.5% 98.2% 1_18del;767C>T;1112A>G
2 human 255057 CBARP CACN subunit beta associate... XM_017026559.1 77.6% 77.3% 1_384del;1133C>T;1478A>G
3 human 255057 CBARP CACN subunit beta associate... XR_001753654.1 62.7% (many diffs)
4 human 255057 CBARP CACN subunit beta associate... XM_017026556.1 57.7% 57.5% (many diffs)
5 human 255057 CBARP CACN subunit beta associate... XM_017026555.1 51.2% 48.4% (many diffs)
6 human 255057 CBARP CACN subunit beta associate... XM_017026560.1 36.1% 35.4% 1_384del;989_990ins41;1008_1009ins676
7 human 255057 CBARP CACN subunit beta associate... XM_017026557.1 35.7% 31.3% (many diffs)
8 human 255057 CBARP CACN subunit beta associate... XM_017026558.1 35.7% 31.3% (many diffs)
9 human 255057 CBARP CACN subunit beta associate... XM_017026561.1 18.5% 16.8% (many diffs)
10 human 255057 CBARP CACN subunit beta associate... XM_017026562.1 18.5% 16.8% (many diffs)
11 mouse 100503659 Cbarp calcium channel, voltage-de... XM_006512973.2 68.5% 70.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1407
ORF length:
1341
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CACAGCCGCC ACCACCACCA CCACCACCAC TGCCACAGTA GCCCTGACGA
121CGTCGTGGGA CAATGCCACT GGACGCCCCA CGGCAGAGCC AGACCCCATC CTGGACAACT
181ACGTGCTGCT GGTGGTGGTG ATGTCGCTGT TCGTGGGGGG CACGCTGGTG GTGTTGTCTG
241GCGTCCTGCT CCTCTGCAAG CGCTGCTGGG ACGTCCACCA GCGCCTCAAC AGGGCCATGG
301AGGAAGCGGA GAAGACCACC ACCACCTACC TGGACAACGG CACCCACCCA GCCCAAGACC
361CCGACTTCCG GGGAGAGGAC CCCGAGTGCC AGGATGCGGA GACCGAACGC TTCCTGTCCA
421CCAGCTCCAC GGGCCGCCGG GTCTCCTTCA ATGAGGCGGC GCTGTTTGAG CAGAGCCGCA
481AGACGCAGGA CAAGGGTCGC CGGTACACAC TGACGGAGGG GGACTTCCAC CACCTGAAGA
541ATGCCCGGCT CACGCACCTG CACCTGCCGC CCCTCAAGAT TGTCACCATC CACGAGTGTG
601ACTCAGGCGA GGCCAGCTCA GCCACCACGC CCCACCCGGC CACCTCTCCC AAGGCCACTC
661TGGCCATCTT CCAGCCCCCG GGGAAGGCCC TCACCGGCCG CTCTGTGGGC CCCAGCTCCG
721CCCTGCCAGG TGACCCCTAC AACTCAGCCG CGGGCGCCAC TGACTTCGCA GAGATCAGCC
781CCTCGGCATC TAGCGACTCT GGGGAAGGCA CCTTGTTGGA TGCCGGTACC AGGAGCACCA
841AGGCTGGAGG GCCCGGGGCT GCAGCAGGGC CTGGGGAGGC GGGCCCGGGA TCCGGGGCAG
901GTACCGTTCT GCAGTTCCTC ACCCGCCTGC GCCGCCATGC CAGCCTGGAT GGGGCCAGCC
961CCTATTTCAA GGTCAAGAAG TGGAAGCTGG AGCCCAGCCA GCGGGCAGCC AGTCTGGACA
1021CGAGAGGTTC CCCCAAGCGG CACCACTTCC AGCGGCAGCG GGCAGCCAGT GAGAGCACGG
1081AGCAGGAGGA GGGGGATGCC CCCCAGGAGG ACTTCATCCA GTACATTGCC CGGGCGGGCG
1141ACGCCGTGGC CTTCCCGCGC CCCCGCCCCT TTCTGGCCAG CCCGCCCCCT GCTCTCGGCA
1201GGTATTTTTC AGTAGATGGA GGTGCTAGGG GTGGACCTGT GGGCCCTTGC CCCCCTTCGC
1261CCCCCCCTAG GCGGCCCAGG GAGCGCTCTC CAGGCCCCGT GGACACGCGC TCGCCTGCCT
1321CCAGCGGCAA GGCCCCTCCC AGAGGCGGAC TCACTGGGGC CACCTCTCCA GCATGGACCA
1381GAGGAGGGAA GCAGGGAGAG ACTGGGTACC CAACTTTCTT GTACAAAGTt ggcattataa
1441gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)