Construct: ORF ccsbBroadEn_09943
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014869.1_s300c1, BRDN0000457137
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DPY19L2 (283417)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 283417 | DPY19L2 | dpy-19 like 2 | NM_173812.5 | 99.7% | 99.3% | (many diffs) |
| 2 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448944.1 | 97% | 96.7% | (many diffs) |
| 3 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448945.1 | 94.1% | 93.7% | (many diffs) |
| 4 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_017019192.2 | 93.1% | 92.7% | (many diffs) |
| 5 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_017019193.2 | 85.2% | 84.6% | (many diffs) |
| 6 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_006719352.2 | 81% | 81% | 0_1ins429;26T>C;243C>A |
| 7 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448946.1 | 81% | 81% | 0_1ins429;26T>C;243C>A |
| 8 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448947.1 | 81% | 81% | 0_1ins429;26T>C;243C>A |
| 9 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448948.1 | 78.4% | 75.8% | (many diffs) |
| 10 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_011538215.2 | 77.3% | 77.4% | 0_1ins513;159C>A |
| 11 | human | 554236 | DPY19L2P1 | DPY19L2 pseudogene 1 | NR_002833.2 | 76.9% | (many diffs) | |
| 12 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448949.1 | 74.4% | 70.3% | (many diffs) |
| 13 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448950.1 | 71.8% | 69.6% | (many diffs) |
| 14 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448952.1 | 70.2% | 69.2% | (many diffs) |
| 15 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448951.1 | 70.2% | 69% | (many diffs) |
| 16 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448953.1 | 67.6% | 66.4% | (many diffs) |
| 17 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_017019201.1 | 58.2% | 58.1% | 0_1ins945;3_6delGGAGinsTCTC |
| 18 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448954.1 | 56.6% | 53.3% | (many diffs) |
| 19 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_017019203.2 | 55.6% | 55.5% | 0_1ins945;3_6delGGAGinsTCTC;270_271ins60 |
| 20 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_017019204.1 | 55.6% | 55.5% | 0_1ins945;3_6delGGAGinsTCTC;270_271ins60 |
| 21 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_011538218.3 | 55.5% | 55.5% | 0_1ins1011 |
| 22 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448955.1 | 55.3% | 53% | (many diffs) |
| 23 | human | 283417 | DPY19L2 | dpy-19 like 2 | XR_002957314.1 | 54.9% | (many diffs) | |
| 24 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448957.1 | 53.4% | 52.9% | (many diffs) |
| 25 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448956.1 | 53.2% | 51.3% | (many diffs) |
| 26 | human | 283417 | DPY19L2 | dpy-19 like 2 | XR_002957315.1 | 51.9% | (many diffs) | |
| 27 | human | 349152 | DPY19L2P2 | DPY19L2 pseudogene 2 | NR_027768.1 | 48.9% | (many diffs) | |
| 28 | human | 283417 | DPY19L2 | dpy-19 like 2 | XR_002957316.1 | 48.3% | (many diffs) | |
| 29 | human | 349152 | DPY19L2P2 | DPY19L2 pseudogene 2 | NR_003561.2 | 39% | (many diffs) | |
| 30 | human | 283417 | DPY19L2 | dpy-19 like 2 | XR_002957318.1 | 17.7% | (many diffs) | |
| 31 | human | 283417 | DPY19L2 | dpy-19 like 2 | XR_002957319.1 | 16.9% | (many diffs) | |
| 32 | human | 283417 | DPY19L2 | dpy-19 like 2 | XR_001748666.2 | 16.7% | (many diffs) | |
| 33 | human | 283417 | DPY19L2 | dpy-19 like 2 | XR_002957317.1 | 16.6% | (many diffs) | |
| 34 | mouse | 320752 | Dpy19l2 | dpy-19-like 2 (C. elegans) | XM_011242557.2 | 56.5% | 55.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2343
- ORF length:
- 2274
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAGAAAACAA GGAGTAAGCG CAAAGCGGCT GCAATCTTCC GGCCGCAGCC 121 AGTCTAAGGG GCGGCGCGGG GCCTCCCTCG CCCGGGAGCC GGAGGTAGAG GAGGAGGTGG 181 AAAAGTCGGT CCTAGGCGGC GGGAAACTGC CAAGGGGCGC CTGGAGGTCC TCCCCGGGGA 241 GGATCCAAAG TCTGAAAGAG CGAAAAGGCT TGGAGCTAGA GGTGGTGGCC AAGACCTTTC 301 TTCTCGGCCC CTTCCAGTTC GTCCGTAATT CCCTGGCGCA GCTCCGGGAA AAGGTGCAGG 361 AACTGCAGGC GCGGCGGTTC TCCAGCAGAA CCACTCTCGG CATCGCTGTC TTTGTGGCAA 421 TTTTACATTG GTTACATTTA GTAACACTTT TTGAAAATGA TCGTCATTTC TCTCACCTCT 481 CATCTTTGGA ACGGGAGATG ACTTTTCGCA CTGAAATGGG ACCTTATTAT TCATACTTCA 541 AGACCATTAT TGAAGCACCT TCGTTTTTGG AAGGACTGTG GATGATTATG AATGACAGGC 601 TTACTGAATA TCCTCTTATA ATTAATGCAA TAAAACGCTT CCATCTTTAT CCAGAGGTAA 661 TCATAGCCTC CTGGTATTGC ACATTCATGG GAATAATGAA TTTATTTGGA CTAGAAACTA 721 AGACCTGCTG GAATGTCACA AGAATAGAAC CTCTTAATGA AGTTCAAAGC TGTGAAGGAT 781 TGGGAGATCC TGCTTGCTTT TATGTTGGTG TAATCTTTAT TTTAAATGGA CTAATGATGG 841 GATTGTTCTT CATGTATGGA GCATACCTGA GTGGGACTCA ACTGGGAGGT CTTATTACAG 901 TACTGTGCTT CTTTTTCAAC CATGGAGAGG CCACCCGTGT GATGTGGACA CCACCTCTCC 961 GTGAAAGTTT TTCCTATCCT TTCCTTGTAC TTCAGATGTG TATTTTAACT TTGATTCTCA 1021 GGACCTCAAG CAATGATAGA AGGCCCTTCA TTGCACTCTG TCTTTCCAAT GTTGCTTTTA 1081 TGCTTCCCTG GCAATTTGCT CAGTTTATAC TTTTTACACA GATAGCATCA TTATTTCCCA 1141 TGTATGTTGT GGGATACATT GAACCAAGCA AATTTCAGAA GATCATTTAT ATGAACATGA 1201 TTTCAGTTAC CCTTAGTTTC ATTTTGATGT TTGGAAATTC AATGTACTTA TCTTCTTATT 1261 ATTCTTCATC TTTGTTAATG ACGTGGGCAA TAATTCTAAA GAGAAATGAA ATTCAAAAAC 1321 TGGGAGTATC TAAACTCAAC TTTTGGCTAA TTCAAGGTAG TGCCTGGTGG TGTGGAACAA 1381 TCATTTTGAA ATTTCTGACA TCTAAAATCT TAGGCGTTTC AGACCACATT CGCCTGAGTG 1441 ATCTTATAGC AGCCAGAATC TTAAGGTATA CAGATTTTGA TACTTTAATA TATACCTGTG 1501 CTCCCGAATT TGACTTCATG GAAAAAGCGA CTCCGCTGAG ATACACAAAG ACATTATTGC 1561 TTCCAGTTGT TATGGTGATT ACATGTTTTA TCTTTAAAAA GACTGTTCGT GATATTTCAT 1621 ATGTTTTAGC TACAAACATT TATCTAAGAA AACAGCTCCT TGAACACAGT GAGCTGGCTT 1681 TTCACACATT GCAGTTGTTA GTGTTTACTG CCCTTGCCAT TTTAATTATG AGGCTAAAGA 1741 TGTTTTTGAC ACCGCACATG TGTGTTATGG CTTCCTTGAT ATGCTCTCGA CAGCTCTTTG 1801 GCTGGCTTTT TCGCAGAGTT CGTTTTGAGA AGGTTATCTT TGGCATTTTA ACAGTGATGT 1861 CAATACAAGG TTATGCAAAC CTCCGTAATC AATGGAGCAT AATAGGAGAA TTTAATAATT 1921 TGCCTCAGGA AGAACTTTTA CAGTGGATCA AATACAGTAC CACATCAGAT GCTGTCTTTG 1981 CAGGTGCCAT GCCTACAATG GCAAGCATCA AGCTGTCTAC ACTTCATCCC ATTGTGAATC 2041 ATCCACATTA CGAAGATGCA GACTTGAGGG CTCGGACAAA AATAGTTTAT TCTACATATA 2101 GTCGAAAATC TGCCAAAGAA GTAAGAGATA AATTGTTGGA GTTACATGTG AATTATTATG 2161 TTTTAGAAGA GGCATGGTGT GTTGTGAGAA CTAAGCCTGG TTGCAGTATG CTTGAAATCT 2221 GGGATGTGGA AGACCCTTCC AATGCAGCTA ACCCTCCCTT ATGTAGCGTC CTGCTCGAAG 2281 ACGCCAGGCC TTACTTCACC ACAGTATTTC AGAATAGTGT GTACAGAGTA TTAAAGGTTA 2341 ACTGCCAACT TTCTTGTACA AAGTTGGcat tataagaaag cattgcttat caatttgttg 2401 caacgaac