Construct: ORF ccsbBroadEn_09943

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014869.1_s300c1, BRDN0000457137
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DPY19L2 (283417)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 283417 DPY19L2 dpy-19 like 2 NM_173812.5 99.7% 99.3% (many diffs)
2 human 283417 DPY19L2 dpy-19 like 2 XM_024448944.1 97% 96.7% (many diffs)
3 human 283417 DPY19L2 dpy-19 like 2 XM_024448945.1 94.1% 93.7% (many diffs)
4 human 283417 DPY19L2 dpy-19 like 2 XM_017019192.2 93.1% 92.7% (many diffs)
5 human 283417 DPY19L2 dpy-19 like 2 XM_017019193.2 85.2% 84.6% (many diffs)
6 human 283417 DPY19L2 dpy-19 like 2 XM_006719352.2 81% 81% 0_1ins429;26T>C;243C>A
7 human 283417 DPY19L2 dpy-19 like 2 XM_024448946.1 81% 81% 0_1ins429;26T>C;243C>A
8 human 283417 DPY19L2 dpy-19 like 2 XM_024448947.1 81% 81% 0_1ins429;26T>C;243C>A
9 human 283417 DPY19L2 dpy-19 like 2 XM_024448948.1 78.4% 75.8% (many diffs)
10 human 283417 DPY19L2 dpy-19 like 2 XM_011538215.2 77.3% 77.4% 0_1ins513;159C>A
11 human 554236 DPY19L2P1 DPY19L2 pseudogene 1 NR_002833.2 76.9% (many diffs)
12 human 283417 DPY19L2 dpy-19 like 2 XM_024448949.1 74.4% 70.3% (many diffs)
13 human 283417 DPY19L2 dpy-19 like 2 XM_024448950.1 71.8% 69.6% (many diffs)
14 human 283417 DPY19L2 dpy-19 like 2 XM_024448952.1 70.2% 69.2% (many diffs)
15 human 283417 DPY19L2 dpy-19 like 2 XM_024448951.1 70.2% 69% (many diffs)
16 human 283417 DPY19L2 dpy-19 like 2 XM_024448953.1 67.6% 66.4% (many diffs)
17 human 283417 DPY19L2 dpy-19 like 2 XM_017019201.1 58.2% 58.1% 0_1ins945;3_6delGGAGinsTCTC
18 human 283417 DPY19L2 dpy-19 like 2 XM_024448954.1 56.6% 53.3% (many diffs)
19 human 283417 DPY19L2 dpy-19 like 2 XM_017019203.2 55.6% 55.5% 0_1ins945;3_6delGGAGinsTCTC;270_271ins60
20 human 283417 DPY19L2 dpy-19 like 2 XM_017019204.1 55.6% 55.5% 0_1ins945;3_6delGGAGinsTCTC;270_271ins60
21 human 283417 DPY19L2 dpy-19 like 2 XM_011538218.3 55.5% 55.5% 0_1ins1011
22 human 283417 DPY19L2 dpy-19 like 2 XM_024448955.1 55.3% 53% (many diffs)
23 human 283417 DPY19L2 dpy-19 like 2 XR_002957314.1 54.9% (many diffs)
24 human 283417 DPY19L2 dpy-19 like 2 XM_024448957.1 53.4% 52.9% (many diffs)
25 human 283417 DPY19L2 dpy-19 like 2 XM_024448956.1 53.2% 51.3% (many diffs)
26 human 283417 DPY19L2 dpy-19 like 2 XR_002957315.1 51.9% (many diffs)
27 human 349152 DPY19L2P2 DPY19L2 pseudogene 2 NR_027768.1 48.9% (many diffs)
28 human 283417 DPY19L2 dpy-19 like 2 XR_002957316.1 48.3% (many diffs)
29 human 349152 DPY19L2P2 DPY19L2 pseudogene 2 NR_003561.2 39% (many diffs)
30 human 283417 DPY19L2 dpy-19 like 2 XR_002957318.1 17.7% (many diffs)
31 human 283417 DPY19L2 dpy-19 like 2 XR_002957319.1 16.9% (many diffs)
32 human 283417 DPY19L2 dpy-19 like 2 XR_001748666.2 16.7% (many diffs)
33 human 283417 DPY19L2 dpy-19 like 2 XR_002957317.1 16.6% (many diffs)
34 mouse 320752 Dpy19l2 dpy-19-like 2 (C. elegans) XM_011242557.2 56.5% 55.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2343
ORF length:
2274
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GAGAAAACAA GGAGTAAGCG CAAAGCGGCT GCAATCTTCC GGCCGCAGCC
121AGTCTAAGGG GCGGCGCGGG GCCTCCCTCG CCCGGGAGCC GGAGGTAGAG GAGGAGGTGG
181AAAAGTCGGT CCTAGGCGGC GGGAAACTGC CAAGGGGCGC CTGGAGGTCC TCCCCGGGGA
241GGATCCAAAG TCTGAAAGAG CGAAAAGGCT TGGAGCTAGA GGTGGTGGCC AAGACCTTTC
301TTCTCGGCCC CTTCCAGTTC GTCCGTAATT CCCTGGCGCA GCTCCGGGAA AAGGTGCAGG
361AACTGCAGGC GCGGCGGTTC TCCAGCAGAA CCACTCTCGG CATCGCTGTC TTTGTGGCAA
421TTTTACATTG GTTACATTTA GTAACACTTT TTGAAAATGA TCGTCATTTC TCTCACCTCT
481CATCTTTGGA ACGGGAGATG ACTTTTCGCA CTGAAATGGG ACCTTATTAT TCATACTTCA
541AGACCATTAT TGAAGCACCT TCGTTTTTGG AAGGACTGTG GATGATTATG AATGACAGGC
601TTACTGAATA TCCTCTTATA ATTAATGCAA TAAAACGCTT CCATCTTTAT CCAGAGGTAA
661TCATAGCCTC CTGGTATTGC ACATTCATGG GAATAATGAA TTTATTTGGA CTAGAAACTA
721AGACCTGCTG GAATGTCACA AGAATAGAAC CTCTTAATGA AGTTCAAAGC TGTGAAGGAT
781TGGGAGATCC TGCTTGCTTT TATGTTGGTG TAATCTTTAT TTTAAATGGA CTAATGATGG
841GATTGTTCTT CATGTATGGA GCATACCTGA GTGGGACTCA ACTGGGAGGT CTTATTACAG
901TACTGTGCTT CTTTTTCAAC CATGGAGAGG CCACCCGTGT GATGTGGACA CCACCTCTCC
961GTGAAAGTTT TTCCTATCCT TTCCTTGTAC TTCAGATGTG TATTTTAACT TTGATTCTCA
1021GGACCTCAAG CAATGATAGA AGGCCCTTCA TTGCACTCTG TCTTTCCAAT GTTGCTTTTA
1081TGCTTCCCTG GCAATTTGCT CAGTTTATAC TTTTTACACA GATAGCATCA TTATTTCCCA
1141TGTATGTTGT GGGATACATT GAACCAAGCA AATTTCAGAA GATCATTTAT ATGAACATGA
1201TTTCAGTTAC CCTTAGTTTC ATTTTGATGT TTGGAAATTC AATGTACTTA TCTTCTTATT
1261ATTCTTCATC TTTGTTAATG ACGTGGGCAA TAATTCTAAA GAGAAATGAA ATTCAAAAAC
1321TGGGAGTATC TAAACTCAAC TTTTGGCTAA TTCAAGGTAG TGCCTGGTGG TGTGGAACAA
1381TCATTTTGAA ATTTCTGACA TCTAAAATCT TAGGCGTTTC AGACCACATT CGCCTGAGTG
1441ATCTTATAGC AGCCAGAATC TTAAGGTATA CAGATTTTGA TACTTTAATA TATACCTGTG
1501CTCCCGAATT TGACTTCATG GAAAAAGCGA CTCCGCTGAG ATACACAAAG ACATTATTGC
1561TTCCAGTTGT TATGGTGATT ACATGTTTTA TCTTTAAAAA GACTGTTCGT GATATTTCAT
1621ATGTTTTAGC TACAAACATT TATCTAAGAA AACAGCTCCT TGAACACAGT GAGCTGGCTT
1681TTCACACATT GCAGTTGTTA GTGTTTACTG CCCTTGCCAT TTTAATTATG AGGCTAAAGA
1741TGTTTTTGAC ACCGCACATG TGTGTTATGG CTTCCTTGAT ATGCTCTCGA CAGCTCTTTG
1801GCTGGCTTTT TCGCAGAGTT CGTTTTGAGA AGGTTATCTT TGGCATTTTA ACAGTGATGT
1861CAATACAAGG TTATGCAAAC CTCCGTAATC AATGGAGCAT AATAGGAGAA TTTAATAATT
1921TGCCTCAGGA AGAACTTTTA CAGTGGATCA AATACAGTAC CACATCAGAT GCTGTCTTTG
1981CAGGTGCCAT GCCTACAATG GCAAGCATCA AGCTGTCTAC ACTTCATCCC ATTGTGAATC
2041ATCCACATTA CGAAGATGCA GACTTGAGGG CTCGGACAAA AATAGTTTAT TCTACATATA
2101GTCGAAAATC TGCCAAAGAA GTAAGAGATA AATTGTTGGA GTTACATGTG AATTATTATG
2161TTTTAGAAGA GGCATGGTGT GTTGTGAGAA CTAAGCCTGG TTGCAGTATG CTTGAAATCT
2221GGGATGTGGA AGACCCTTCC AATGCAGCTA ACCCTCCCTT ATGTAGCGTC CTGCTCGAAG
2281ACGCCAGGCC TTACTTCACC ACAGTATTTC AGAATAGTGT GTACAGAGTA TTAAAGGTTA
2341ACTGCCAACT TTCTTGTACA AAGTTGGcat tataagaaag cattgcttat caatttgttg
2401caacgaac

Download FASTA (ORF) (Full)

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