Construct: ORF ccsbBroadEn_09947
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010267.1_s300c1, BRDN0000455856
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OR4N4 (283694)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 283694 | OR4N4 | olfactory receptor family 4... | NM_001005241.3 | 99.5% | 100% | (many diffs) |
| 2 | human | 102723532 | LOC102723532 | olfactory receptor 4N4-like | XM_011546222.1 | 99.4% | 99% | (many diffs) |
| 3 | human | 102723532 | LOC102723532 | olfactory receptor 4N4-like | XM_011546224.2 | 99.4% | 99% | (many diffs) |
| 4 | human | 102723532 | LOC102723532 | olfactory receptor 4N4-like | XM_017030115.1 | 99.4% | 99% | (many diffs) |
| 5 | human | 102723532 | LOC102723532 | olfactory receptor 4N4-like | XM_017030116.1 | 99.4% | 99% | (many diffs) |
| 6 | human | 102723532 | LOC102723532 | olfactory receptor 4N4-like | XM_017030117.1 | 99.4% | 99% | (many diffs) |
| 7 | human | 102723532 | LOC102723532 | olfactory receptor 4N4-like | XM_017030118.1 | 99.4% | 99% | (many diffs) |
| 8 | human | 105369274 | LOC105369274 | olfactory receptor 4N4 | NM_001365389.1 | 94.6% | 94.5% | 1_51del;438T>C;828A>G |
| 9 | human | 102723532 | LOC102723532 | olfactory receptor 4N4-like | XM_011546215.2 | 94.3% | 93.9% | (many diffs) |
| 10 | human | 390429 | OR4N2 | olfactory receptor family 4... | NM_001004723.3 | 87.8% | 83.2% | (many diffs) |
| 11 | human | 390539 | OR4N3P | olfactory receptor family 4... | NR_028067.1 | 87.6% | (many diffs) | |
| 12 | human | 390437 | OR4N5 | olfactory receptor family 4... | NM_001004724.1 | 83.4% | 81.6% | (many diffs) |
| 13 | human | 102723532 | LOC102723532 | olfactory receptor 4N4-like | XM_011546201.1 | 78.9% | 78.6% | (many diffs) |
| 14 | human | 102723532 | LOC102723532 | olfactory receptor 4N4-like | XM_011546205.1 | 78.9% | 78.6% | (many diffs) |
| 15 | human | 102723532 | LOC102723532 | olfactory receptor 4N4-like | XM_011546206.1 | 78.9% | 78.6% | (many diffs) |
| 16 | human | 102723532 | LOC102723532 | olfactory receptor 4N4-like | XM_017030114.1 | 78.9% | 78.6% | (many diffs) |
| 17 | human | 102723532 | LOC102723532 | olfactory receptor 4N4-like | XM_024452500.1 | 78.9% | 78.6% | (many diffs) |
| 18 | human | 101927079 | LOC101927079 | uncharacterized LOC101927079 | NR_110481.1 | 23% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1017
- ORF length:
- 948
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAAGATAGCA AACAACACAG TAGTGACAGA ATTTATCCTC CTTGGTCTGA 121 CTCAGTCTCA AGATATTCAG CTCTTGGTCT TTGTGCTGAT CTTAATTTTC TACCTTATCA 181 TCCTCCCTGG AAATTTTCTC ATTATTTTCA CCATAAGGTC AGACCCTGGG CTCACAGCCC 241 CCCTCTATTT ATTTCTGGGC AACTTGGCCT TCCTGGATGC ATCCTACTCC TTCATTGTGG 301 CTCCCAGGAT GTTGGTGGAC TTCCTCTCTG AGAAGAAGGT AATCTCCTAC AGAGGCTGCA 361 TCACTCAGCT CTTTTTCTTG CACTTCCTTG GAGGAGGGGA GGGATTACTC CTTGTTGTGA 421 TGGCCTTTGA CCGCTACATC GCCATCTGCC GGCCCCTGCA CTGTTCAACT GTCATGAACC 481 CTAGAGCCTG CTATGCAATG ATGTTGGCTC TGTGGCTTGG GGGTTTTGTC CACTCCATTA 541 TCCAGGTGGT CCTCATCCTC CGCTTGCCTT TTTGTGGCCC AAACCAGCTG GACAACTTCT 601 TCTGTGATGT CCGACAGGTC ATCAAGCTGG CTTGCACCGA CATGTTTGTG GTGGAGCTTC 661 TGATGGTCTT CAACAGTGGC CTGATGACAC TCCTGTGCTT TCTGGGGCTT CTGGCTTCCT 721 ATGCAGTCAT CCTCTGCCAT GTTCGTAGGG CAGCTTCTGA AGGGAAGAAC AAGGCCATGT 781 CCACATGCAC CACTCGTGTC ATTATTATAC TTCTTATGTT TGGACCTGCT ATCTTCATCT 841 ACATGTGCCC TTTCAGGGCC TTACCAGCTG ACAAGATGGT TTCTCTCTTT CACACAGTGA 901 TCTTTCCATT GATGAATCCT ATGATTTATA CCCTTCGCAA CCAGGAAGTG AAAACTTCCA 961 TGAAGAGGTT ATTGAGTCGA CATGTAGTCT GTCAAGTGGA TTTTATAATA AGAAACTTGC 1021 CAACTTTCTT GTACAAAGTT GGcattataa gaaagcattg cttatcaatt tgttgcaacg 1081 aac