Construct: ORF ccsbBroadEn_09988
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018256.1_s300c1, BRDN0000456379
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF789 (285989)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 285989 | ZNF789 | zinc finger protein 789 | NM_213603.3 | 99.8% | 99.5% | 229A>G;814C>A |
| 2 | human | 285989 | ZNF789 | zinc finger protein 789 | XM_017012018.1 | 99.8% | 99.5% | 229A>G;814C>A |
| 3 | human | 285989 | ZNF789 | zinc finger protein 789 | XM_011516067.2 | 98.1% | 97.6% | (many diffs) |
| 4 | human | 285989 | ZNF789 | zinc finger protein 789 | XM_024446723.1 | 98.1% | 97.6% | (many diffs) |
| 5 | human | 285989 | ZNF789 | zinc finger protein 789 | NM_001350999.1 | 95.8% | 95.5% | 0_1ins51;178A>G;763C>A |
| 6 | human | 285989 | ZNF789 | zinc finger protein 789 | XM_017012022.1 | 91.4% | 86.9% | (many diffs) |
| 7 | human | 285989 | ZNF789 | zinc finger protein 789 | XM_024446724.1 | 91.4% | 86.9% | (many diffs) |
| 8 | human | 285989 | ZNF789 | zinc finger protein 789 | NM_001351000.1 | 90.9% | 90.8% | 150_151ins114;700C>A |
| 9 | human | 285989 | ZNF789 | zinc finger protein 789 | NM_001351002.1 | 77.5% | 77.4% | 0_1ins285;529C>A |
| 10 | human | 285989 | ZNF789 | zinc finger protein 789 | NM_001351004.1 | 77.5% | 77.4% | 0_1ins285;529C>A |
| 11 | human | 285989 | ZNF789 | zinc finger protein 789 | XM_011516073.2 | 77.5% | 77.4% | 0_1ins285;529C>A |
| 12 | human | 285989 | ZNF789 | zinc finger protein 789 | XM_024446725.1 | 77.5% | 77.4% | 0_1ins285;529C>A |
| 13 | human | 285989 | ZNF789 | zinc finger protein 789 | NM_001351001.2 | 13.8% | 12.7% | (many diffs) |
| 14 | human | 285989 | ZNF789 | zinc finger protein 789 | NM_001013258.2 | 13.3% | 12.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1344
- ORF length:
- 1275
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTTCCCACCA GCCAGGGGGA AGGAGCTGCT CTCGTTTGAG GATGTGGCGA 121 TGTACTTCAC CAGAGAGGAG TGGGGCCACC TCAACTGGGG TCAGAAGGAC CTCTACCGAG 181 ATGTGATGTT GGAGAACTAC AGGAACATGG TCTTGCTGGG ATTTCAGTTT CCCAAACCTG 241 AGATGATCTG TCAGCTGGAG AACTGGGACG AGCAGTGGAT CCTGGATCTA CCGAGAGCTG 301 GGAATAGGAA GGCTTCCGGT AGTGCTTGCC CAGGTTCTGA AGCCAGACAC AAGATGAAAA 361 AGCTAACTCC AAAACAGAAA TTTTCTGAAG ATTTAGAGTC ATATAAGATA TCAGTGGTAA 421 TGCAGGAATC AGCTGAGAAA CTTTCAGAAA AGTTACATAA GTGTAAAGAA TTTGTGGACA 481 GTTGCAGGCT TACTTTCCCT ACTAGTGGTG ATGAATACAG CAGGGGCTTC CTTCAAAACC 541 TTAACCTTAT TCAAGATCAG AATGCGCAAA CAAGGTGGAA GCAGGGCAGA TATGATGAGG 601 ATGGCAAACC CTTCAATCAA AGATCTTTGC TTTTGGGGCA TGAGCGAATT CTCACAAGAG 661 CAAAGTCTTA TGAATGCAGT GAATGTGGAA AAGTCATTAG GCGTAAGGCA TGGTTTGATC 721 AACATCAAAG AATTCACTTT TTAGAGAATC CTTTTGAGTG TAAGGTCTGT GGGCAAGCCT 781 TCAGACAGCG GTCAGCTCTT ACGGTCCATA AACAGTGTCA CCTGCAAAAC AAGCCATACA 841 GATGTCATGA CTGTGGAAAG TGTTTTCGGC AGCTCGCGTA TATTGTTGAA CATAAGAGGA 901 TTCACACCAA AGAAAAACCT TATAAATGTA GCAAATGTGA AAAAACGTTT AGTCAGAATT 961 CAACCCTTAT TCGACATCAG GTGATCCATA GTGGAGAAAA ACGCCATAAA TGCCTTGAGT 1021 GTGGAAAAGC CTTTGGCCGG CATTCAACCC TTCTATGTCA TCAACAGATT CACAGTAAAC 1081 CGAACACCCA TAAATGCAGT GAATGTGGAC AGTCCTTTGG TAGGAATGTG GATCTCATTC 1141 AGCATCAAAG AATCCATACA AAGGAGGAAT TCTTTCAATG TGGAGAATGT GGGAAAACGT 1201 TTAGTTTTAA GAGGAATCTT TTTCGACATC AGGTCATTCA CACTGGAAGC CAACCCTACC 1261 AATGTGTCAT ATGTGGAAAA TCTTTCAAGT GGCACACAAG CTTTATTAAG CACCAGGGCA 1321 CTCACAAAGG ACAGATATCC ACATTGCCAA CTTTCTTGTA CAAAGTTGGc attataagaa 1381 agcattgctt atcaatttgt tgcaacgaac