Construct: ORF ccsbBroadEn_09988

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018256.1_s300c1, BRDN0000456379
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF789 (285989)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 285989 ZNF789 zinc finger protein 789 NM_213603.3 99.8% 99.5% 229A>G;814C>A
2 human 285989 ZNF789 zinc finger protein 789 XM_017012018.1 99.8% 99.5% 229A>G;814C>A
3 human 285989 ZNF789 zinc finger protein 789 XM_011516067.2 98.1% 97.6% (many diffs)
4 human 285989 ZNF789 zinc finger protein 789 XM_024446723.1 98.1% 97.6% (many diffs)
5 human 285989 ZNF789 zinc finger protein 789 NM_001350999.1 95.8% 95.5% 0_1ins51;178A>G;763C>A
6 human 285989 ZNF789 zinc finger protein 789 XM_017012022.1 91.4% 86.9% (many diffs)
7 human 285989 ZNF789 zinc finger protein 789 XM_024446724.1 91.4% 86.9% (many diffs)
8 human 285989 ZNF789 zinc finger protein 789 NM_001351000.1 90.9% 90.8% 150_151ins114;700C>A
9 human 285989 ZNF789 zinc finger protein 789 NM_001351002.1 77.5% 77.4% 0_1ins285;529C>A
10 human 285989 ZNF789 zinc finger protein 789 NM_001351004.1 77.5% 77.4% 0_1ins285;529C>A
11 human 285989 ZNF789 zinc finger protein 789 XM_011516073.2 77.5% 77.4% 0_1ins285;529C>A
12 human 285989 ZNF789 zinc finger protein 789 XM_024446725.1 77.5% 77.4% 0_1ins285;529C>A
13 human 285989 ZNF789 zinc finger protein 789 NM_001351001.2 13.8% 12.7% (many diffs)
14 human 285989 ZNF789 zinc finger protein 789 NM_001013258.2 13.3% 12.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1344
ORF length:
1275
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTTCCCACCA GCCAGGGGGA AGGAGCTGCT CTCGTTTGAG GATGTGGCGA
121TGTACTTCAC CAGAGAGGAG TGGGGCCACC TCAACTGGGG TCAGAAGGAC CTCTACCGAG
181ATGTGATGTT GGAGAACTAC AGGAACATGG TCTTGCTGGG ATTTCAGTTT CCCAAACCTG
241AGATGATCTG TCAGCTGGAG AACTGGGACG AGCAGTGGAT CCTGGATCTA CCGAGAGCTG
301GGAATAGGAA GGCTTCCGGT AGTGCTTGCC CAGGTTCTGA AGCCAGACAC AAGATGAAAA
361AGCTAACTCC AAAACAGAAA TTTTCTGAAG ATTTAGAGTC ATATAAGATA TCAGTGGTAA
421TGCAGGAATC AGCTGAGAAA CTTTCAGAAA AGTTACATAA GTGTAAAGAA TTTGTGGACA
481GTTGCAGGCT TACTTTCCCT ACTAGTGGTG ATGAATACAG CAGGGGCTTC CTTCAAAACC
541TTAACCTTAT TCAAGATCAG AATGCGCAAA CAAGGTGGAA GCAGGGCAGA TATGATGAGG
601ATGGCAAACC CTTCAATCAA AGATCTTTGC TTTTGGGGCA TGAGCGAATT CTCACAAGAG
661CAAAGTCTTA TGAATGCAGT GAATGTGGAA AAGTCATTAG GCGTAAGGCA TGGTTTGATC
721AACATCAAAG AATTCACTTT TTAGAGAATC CTTTTGAGTG TAAGGTCTGT GGGCAAGCCT
781TCAGACAGCG GTCAGCTCTT ACGGTCCATA AACAGTGTCA CCTGCAAAAC AAGCCATACA
841GATGTCATGA CTGTGGAAAG TGTTTTCGGC AGCTCGCGTA TATTGTTGAA CATAAGAGGA
901TTCACACCAA AGAAAAACCT TATAAATGTA GCAAATGTGA AAAAACGTTT AGTCAGAATT
961CAACCCTTAT TCGACATCAG GTGATCCATA GTGGAGAAAA ACGCCATAAA TGCCTTGAGT
1021GTGGAAAAGC CTTTGGCCGG CATTCAACCC TTCTATGTCA TCAACAGATT CACAGTAAAC
1081CGAACACCCA TAAATGCAGT GAATGTGGAC AGTCCTTTGG TAGGAATGTG GATCTCATTC
1141AGCATCAAAG AATCCATACA AAGGAGGAAT TCTTTCAATG TGGAGAATGT GGGAAAACGT
1201TTAGTTTTAA GAGGAATCTT TTTCGACATC AGGTCATTCA CACTGGAAGC CAACCCTACC
1261AATGTGTCAT ATGTGGAAAA TCTTTCAAGT GGCACACAAG CTTTATTAAG CACCAGGGCA
1321CTCACAAAGG ACAGATATCC ACATTGCCAA CTTTCTTGTA CAAAGTTGGc attataagaa
1381agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)