Construct: ORF ccsbBroadEn_10007
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016237.1_s300c1, BRDN0000394804
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LOC339010 (339010)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 102724631 | POTEB3 | POTE ankyrin domain family ... | NM_207355.3 | 99.7% | 99.4% | (many diffs) |
| 2 | human | 102723502 | LOC102723502 | POTE ankyrin domain family ... | XM_006724900.4 | 99.6% | 99.4% | (many diffs) |
| 3 | human | 100288966 | LOC100288966 | POTE ankyrin domain family ... | NM_001257362.2 | 97.6% | 95.2% | (many diffs) |
| 4 | human | 317754 | POTED | POTE ankyrin domain family ... | NM_174981.3 | 97.6% | 95.2% | (many diffs) |
| 5 | human | 100287399 | POTEB2 | POTE ankyrin domain family ... | NM_001277303.1 | 93.4% | 93.2% | (many diffs) |
| 6 | human | 100996331 | POTEB | POTE ankyrin domain family ... | NM_001277304.1 | 93.4% | 93.2% | (many diffs) |
| 7 | human | 388468 | POTEC | POTE ankyrin domain family ... | NM_001137671.1 | 90.9% | 89.8% | (many diffs) |
| 8 | human | 404785 | POTEG | POTE ankyrin domain family ... | NM_001005356.3 | 81.6% | 77.4% | (many diffs) |
| 9 | human | 641455 | POTEM | POTE ankyrin domain family ... | NM_001145442.1 | 81.4% | 77.2% | (many diffs) |
| 10 | human | 404785 | POTEG | POTE ankyrin domain family ... | NR_027480.1 | 81% | (many diffs) | |
| 11 | human | 100287399 | POTEB2 | POTE ankyrin domain family ... | NR_102390.1 | 79% | (many diffs) | |
| 12 | human | 100996331 | POTEB | POTE ankyrin domain family ... | NR_102391.1 | 79% | (many diffs) | |
| 13 | human | 23784 | POTEH | POTE ankyrin domain family ... | NM_001136213.1 | 76.9% | 73.1% | (many diffs) |
| 14 | human | 340441 | POTEA | POTE ankyrin domain family ... | XM_024447146.1 | 70.7% | 63.3% | (many diffs) |
| 15 | human | 340441 | POTEA | POTE ankyrin domain family ... | NM_001005365.2 | 66.5% | 57.1% | (many diffs) |
| 16 | human | 102724631 | POTEB3 | POTE ankyrin domain family ... | XM_006720358.2 | 66% | 64.7% | 1124_1125ins71;1152_1153ins520 |
| 17 | human | 102723502 | LOC102723502 | POTE ankyrin domain family ... | XM_006724901.3 | 65.9% | 64.5% | (many diffs) |
| 18 | human | 102724631 | POTEB3 | POTE ankyrin domain family ... | XM_011543795.2 | 65.2% | 64.8% | (many diffs) |
| 19 | human | 100288966 | LOC100288966 | POTE ankyrin domain family ... | XM_006709930.3 | 65.1% | 62.3% | (many diffs) |
| 20 | human | 317754 | POTED | POTE ankyrin domain family ... | XM_006723997.3 | 65.1% | 62.3% | (many diffs) |
| 21 | human | 102724631 | POTEB3 | POTE ankyrin domain family ... | XM_011543796.2 | 64.7% | 64.5% | 1126_1127insAACAAGACTTAAAGC;1128_1129ins600 |
| 22 | human | 102724631 | POTEB3 | POTE ankyrin domain family ... | XM_011543797.2 | 64.6% | 64.5% | 1127_1128delGTins617 |
| 23 | human | 102723502 | LOC102723502 | POTE ankyrin domain family ... | XM_011546199.2 | 64.5% | 64.3% | (many diffs) |
| 24 | human | 102723502 | LOC102723502 | POTE ankyrin domain family ... | XM_011546200.2 | 64.4% | 64.3% | (many diffs) |
| 25 | human | 317754 | POTED | POTE ankyrin domain family ... | XM_011529550.2 | 63.7% | 62.1% | (many diffs) |
| 26 | human | 100288966 | LOC100288966 | POTE ankyrin domain family ... | XM_011545655.2 | 63.7% | 62.1% | (many diffs) |
| 27 | human | 100288966 | LOC100288966 | POTE ankyrin domain family ... | XM_011545656.2 | 63.6% | 62.1% | (many diffs) |
| 28 | human | 102724631 | POTEB3 | POTE ankyrin domain family ... | NR_110752.1 | 62.9% | (many diffs) | |
| 29 | human | 340441 | POTEA | POTE ankyrin domain family ... | NM_001002920.1 | 60% | 51.3% | (many diffs) |
| 30 | human | 100287399 | POTEB2 | POTE ankyrin domain family ... | XM_006720354.3 | 59.5% | 58% | (many diffs) |
| 31 | human | 100996331 | POTEB | POTE ankyrin domain family ... | XM_006720355.3 | 59.5% | 58% | (many diffs) |
| 32 | human | 100287399 | POTEB2 | POTE ankyrin domain family ... | XM_011543793.2 | 58.1% | 57.8% | (many diffs) |
| 33 | human | 100996331 | POTEB | POTE ankyrin domain family ... | XM_011543794.2 | 58.1% | 57.8% | (many diffs) |
| 34 | human | 100287399 | POTEB2 | POTE ankyrin domain family ... | XM_017021853.1 | 58% | 57.8% | (many diffs) |
| 35 | human | 100996331 | POTEB | POTE ankyrin domain family ... | XM_017021858.1 | 58% | 57.8% | (many diffs) |
| 36 | human | 445582 | POTEE | POTE ankyrin domain family ... | XM_011511216.2 | 55.6% | 52.5% | (many diffs) |
| 37 | human | 445582 | POTEE | POTE ankyrin domain family ... | XM_017004159.2 | 55.1% | 51.9% | (many diffs) |
| 38 | human | 440915 | POTEKP | POTE ankyrin domain family ... | NR_033885.3 | 52% | (many diffs) | |
| 39 | human | 653269 | POTEI | POTE ankyrin domain family ... | NM_001277406.2 | 49.7% | 47.1% | (many diffs) |
| 40 | human | 653269 | POTEI | POTE ankyrin domain family ... | XM_024453046.1 | 49.7% | 47.1% | (many diffs) |
| 41 | human | 445582 | POTEE | POTE ankyrin domain family ... | NM_001083538.2 | 49.6% | 46.8% | (many diffs) |
| 42 | human | 445582 | POTEE | POTE ankyrin domain family ... | XM_017004161.2 | 49.6% | 46.8% | (many diffs) |
| 43 | human | 728378 | POTEF | POTE ankyrin domain family ... | NM_001099771.2 | 49.5% | 46.8% | (many diffs) |
| 44 | human | 653269 | POTEI | POTE ankyrin domain family ... | XM_011511670.2 | 49.3% | 46.6% | (many diffs) |
| 45 | human | 653269 | POTEI | POTE ankyrin domain family ... | XM_017004732.2 | 49.3% | 46.6% | (many diffs) |
| 46 | human | 728378 | POTEF | POTE ankyrin domain family ... | XM_017004833.1 | 49.1% | 46.4% | (many diffs) |
| 47 | human | 653269 | POTEI | POTE ankyrin domain family ... | NM_001371926.1 | 48.8% | 46.1% | (many diffs) |
| 48 | human | 340441 | POTEA | POTE ankyrin domain family ... | XM_011544516.1 | 47.5% | 41.6% | (many diffs) |
| 49 | human | 653781 | POTEJ | POTE ankyrin domain family ... | NM_001277083.2 | 46.7% | 44.2% | (many diffs) |
| 50 | human | 653781 | POTEJ | POTE ankyrin domain family ... | XM_011511683.2 | 46.3% | 43.8% | (many diffs) |
| 51 | human | 653781 | POTEJ | POTE ankyrin domain family ... | XM_017004741.2 | 46.3% | 43.8% | (many diffs) |
| 52 | human | 388468 | POTEC | POTE ankyrin domain family ... | NR_134878.1 | 24.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1812
- ORF length:
- 1743
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGTGGCTGAG GTTTGTTCAA TGCCCGCTGC CTCTGCTGTG AAGAAGCCAT 121 TTGATCTCAG GAGCAAGATG GGCAAGTGGT GCCACCACCG CTTCCCCTGC TGCAGGGGGA 181 GCGGCAAGAG CAACATGGGC ACTTCTGGAG ACCACGACGA CTCCTTTATG AAGACGCTCA 241 GGAGCAAGAT GGGCAAGTGT TGCCACCACT GCTTCCCCTG CTGCAGGGGG AGCGGCACGA 301 GCAATGTGGG CACTTCTGGA GACCATGACA ACTCCTTTAT GAAGACACTC AGGAGCAAGA 361 TGGGCAAGTG GTGCTGTCAC TGCTTCCCCT GCTGCAGGGG GAGCGGCAAG AGCAACGTGG 421 GCACTTGGGG AGACTACGAC GACAGCGCCT TCATGGAGCC GAGGTACCAC GTCCGTCGAG 481 AAGATCTGGA CAAGCTCCAC AGAGCTGCCT GGTGGGGTAA AGTCCCCAGA AAGGATCTCA 541 TCGTCATGCT CAGGGACACT GACATGAACA AGAGGGACAA GCAAAAGAGG ACTGCTCTAC 601 ATTTGGCCTC TGCCAATGGA AATTCAGAAG TAGTACAACT CCTGCTGGAC AGACGATGTC 661 AACTTAACGT CCTTGACAAC AAAAAAAGGA CAGCTCTGAT AAAGGCCGTA CAATGCCAGG 721 AAGATGAATG TGTGTTAATG TTGCTGGAAC ATGGCGCTGA TGGAAATATT CAAGATGAGT 781 ATGGAAATAC CGCTCTACAC TATGCTATCT ACAATGAAGA TAAATTAATG GCCAAAGCAC 841 TGCTCTTATA TGGTGCTGAT ATTGAATCAA AAAACAAGTG TGGCCTCACA CCACTTTTGC 901 TTGGCGTACA TGAACAAAAA CAGCAAGTGG TGAAATTTTT AATCAAGAAA AAAGCTAATT 961 TAAATGCACT TGATAGATAT GGAAGAACTG CCCTCATACT TGCTGTATGT TGTGGATCAG 1021 CAAGTATAGT CAATCTTCTA CTTGAGCAAA ATGTTGATGT ATCTTCTCAA GATCTATCTG 1081 GACAGACGGC CAGAGAGTAT GCTGTTTCTA GTCATCATCA TGTAATTTGT GAATTACTTT 1141 CTGACTATAA AGAAAAACAG ATGCTAAAAA TCTCTTCTGA AAACAGCAAT CCAGAACAAG 1201 ACTTAAAGCT GACATCAGAG GAAGAGTCAC AAAGGCTTAA AGTCAGTGAA AATAGTCAGC 1261 CAGAGAAAAT GTCTCAAGAA CCAGAAATAA ATAAGGACTG TGATAGAGAG GTTGAAGAAG 1321 AAATAAAGAA GCATGGAAGT AATCCTGTGG GATTACCAGA AAACCTGACT AATGGTGCCA 1381 GTGCTGGCAA TGGTGATGAT GGATTAATTC CACAAAGGAA GAGCAGAAAA CCTGAAAATC 1441 AGCAATTTCC TGACACTGAG AATGAAGAGT ATCACAGTGA CGAACAAAAT GATACCCAGA 1501 AACAACTTTC TGAAGAACAG AACACTGGAA TATCACAAGA TGAGATTCTG ACTAATAAAC 1561 AAAAGCAGAT AGAAGTGGCT GAAAAGGAAA TGAATTCTGA GCTTTCTCTT AGTCATAAGA 1621 AAGAAGAAGA TCTCTTGCGT GAAAACAGCA TGTTGCGGGA AGAAATTGCC AAGCTAAGAC 1681 TGGAACTAGA TGAAACAAAA CATCAGAACC AGCTAAGGGA AAATAAAATT TTGGAGGAAA 1741 TTGAAAGTGT AAAAGAAAAA CTTCTAAAGA CTATACAACT GAATGAAGAA GCATTAACGA 1801 AAACCAGTAT TTTGCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 1861 caatttgttg caacgaac