Construct: ORF ccsbBroadEn_10209
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015900.1_s300c1, BRDN0000392574
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- BTN3A2 (11118)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | NM_001197246.2 | 99.4% | 99.4% | 1_6delATGAAA |
| 2 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | NM_001197247.3 | 99.4% | 99.4% | 1_6delATGAAA |
| 3 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | NM_007047.5 | 99.4% | 99.4% | 1_6delATGAAA |
| 4 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_005248827.4 | 99.4% | 99.4% | 1_6delATGAAA |
| 5 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_017010211.1 | 99.4% | 99.4% | 1_6delATGAAA |
| 6 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_017010212.1 | 99.4% | 99.4% | 1_6delATGAAA |
| 7 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_006714979.4 | 97.9% | 97.9% | 1_6delATGAAA;710_724del |
| 8 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_006714980.4 | 97.9% | 97.9% | 1_6delATGAAA;710_724del |
| 9 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_006714981.4 | 97.9% | 97.9% | 1_6delATGAAA;710_724del |
| 10 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_011514267.3 | 97.9% | 97.9% | 1_6delATGAAA;710_724del |
| 11 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | NM_001197248.2 | 90.9% | 92.1% | 0_1ins77;2_15del |
| 12 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | NM_001197249.2 | 87.9% | 87.9% | 0_1ins120 |
| 13 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_017010214.2 | 87.9% | 87.9% | 0_1ins120 |
| 14 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_006714982.4 | 86.6% | 86.6% | 0_1ins120;584_598del |
| 15 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_011514269.3 | 86.6% | 86.6% | 0_1ins120;584_598del |
| 16 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_017010213.2 | 86.6% | 86.6% | 0_1ins120;584_598del |
| 17 | human | 11119 | BTN3A1 | butyrophilin subfamily 3 me... | NM_194441.3 | 84.4% | 77.8% | (many diffs) |
| 18 | human | 11119 | BTN3A1 | butyrophilin subfamily 3 me... | XM_005248834.4 | 84.4% | 77.8% | (many diffs) |
| 19 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_005248831.4 | 79.3% | 79.3% | 1_6delATGAAA;713_714ins201 |
| 20 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_005248832.4 | 79.3% | 79.3% | 1_6delATGAAA;713_714ins201 |
| 21 | human | 11119 | BTN3A1 | butyrophilin subfamily 3 me... | NM_001145009.2 | 78.7% | 72.4% | (many diffs) |
| 22 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_011514270.3 | 71.2% | 71.2% | 1_6delATGAAA;429_430ins282 |
| 23 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_011514271.2 | 71.2% | 71.2% | 1_6delATGAAA;429_430ins282 |
| 24 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_017010215.2 | 71.2% | 71.2% | 1_6delATGAAA;429_430ins282 |
| 25 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_017010216.2 | 67.7% | 67.7% | 0_1ins120;587_588ins201 |
| 26 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_017010217.2 | 59.6% | 59.6% | 0_1ins120;303_304ins282 |
| 27 | human | 11119 | BTN3A1 | butyrophilin subfamily 3 me... | XM_005248833.2 | 59.6% | 52.6% | (many diffs) |
| 28 | human | 11119 | BTN3A1 | butyrophilin subfamily 3 me... | NM_007048.6 | 58.1% | 53.4% | (many diffs) |
| 29 | human | 10384 | BTN3A3 | butyrophilin subfamily 3 me... | NM_006994.5 | 54% | 51.7% | (many diffs) |
| 30 | human | 11119 | BTN3A1 | butyrophilin subfamily 3 me... | XR_001743130.1 | 50.6% | (many diffs) | |
| 31 | human | 11119 | BTN3A1 | butyrophilin subfamily 3 me... | NM_001145008.2 | 48.7% | 44.2% | (many diffs) |
| 32 | human | 10384 | BTN3A3 | butyrophilin subfamily 3 me... | NM_197974.3 | 46.4% | 44.1% | (many diffs) |
| 33 | human | 11119 | BTN3A1 | butyrophilin subfamily 3 me... | XM_006714983.3 | 41.1% | 36.8% | (many diffs) |
| 34 | human | 11119 | BTN3A1 | butyrophilin subfamily 3 me... | XR_001743132.1 | 27.6% | (many diffs) | |
| 35 | human | 11119 | BTN3A1 | butyrophilin subfamily 3 me... | XR_926039.3 | 24.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1062
- ORF length:
- 996
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC AAGTTCCCTG GCTTTCCTTC TGCTCAACTT TCATGTCTCC CTCCTCTTGG 121 TCCAGCTGCT CACTCCTTGC TCAGCTCAGT TTTCTGTGCT TGGACCCTCT GGGCCCATCC 181 TGGCCATGGT GGGTGAAGAC GCTGATCTGC CCTGTCACCT GTTCCCGACC ATGAGTGCAG 241 AGACCATGGA GCTGAAGTGG GTAAGTTCCA GCCTAAGGCA GGTGGTGAAC GTGTATGCAG 301 ATGGAAAGGA AGTGGAAGAC AGGCAGAGTG CACCGTATCG AGGGAGAACT TCGATTCTGC 361 GGGATGGCAT CACTGCAGGG AAGGCTGCTC TCCGAATACA CAACGTCACA GCCTCTGACA 421 GTGGAAAGTA CTTGTGTTAT TTCCAAGATG GTGACTTCTA TGAAAAAGCC CTGGTGGAGC 481 TGAAGGTTGC AGCACTGGGT TCTAATCTTC ACGTCGAAGT GAAGGGTTAT GAGGATGGAG 541 GGATCCATCT GGAGTGCAGG TCCACCGGCT GGTACCCCCA ACCCCAAATA CAGTGGAGCA 601 ACGCCAAGGG AGAGAACATC CCAGCTGTGG AAGCACCTGT GGTTGCAGAT GGAGTGGGCC 661 TATATGAAGT AGCAGCATCT GTGATCATGA GAGGCGGCTC CGGGGAGGGT GTATCCTGCA 721 TCATCAGAAA TTCCCTCCTC GGCCTGGAAA AGACAGCCAG CATTTCCATC GCAGACCCCT 781 TCTTCAGGAG CGCCCAGCCC TGGATCGCAG CCCTGGCAGG GACCCTGCCT ATCTTGCTGC 841 TGCTTCTCGC CGGAGCCAGT TACTTCTTGT GGAGACAACA GAAGGAAATA ACTGCTCTGT 901 CCAGTGAGAT AGAAAGTGAG CAAGAGATGA AAGAAATGGG ATATGCTGCA ACAGAGCGGG 961 AAATAAGCCT AAGAGAGAGC CTCCAGGAGG AACTCAAGAG GAAAAAAATC CAGTACTTGA 1021 CTCGTGGAGA GGAGTCTTCG TCCGATACCA ATAAGTCAGC CTGCCCAACT TTCTTGTACA 1081 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac