Construct: ORF ccsbBroadEn_10299
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010799.1_s300c1, BRDN0000396129
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF738 (148203)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 148203 | ZNF738 | zinc finger protein 738 | NM_001355239.2 | 100% | 100% | |
| 2 | human | 148203 | ZNF738 | zinc finger protein 738 | NM_001355240.1 | 82.6% | 79.5% | (many diffs) |
| 3 | human | 148203 | ZNF738 | zinc finger protein 738 | NM_001355241.2 | 78.3% | 77.3% | (many diffs) |
| 4 | human | 284443 | ZNF493 | zinc finger protein 493 | NM_145326.3 | 64.6% | 51.7% | (many diffs) |
| 5 | human | 440519 | ZNF724 | zinc finger protein 724 | XM_024451521.1 | 50% | 45.9% | (many diffs) |
| 6 | human | 51427 | ZNF107 | zinc finger protein 107 | XM_024446791.1 | 48.5% | 43% | (many diffs) |
| 7 | human | 7697 | ZNF138 | zinc finger protein 138 | NM_001271637.2 | 39.4% | 26.7% | (many diffs) |
| 8 | human | 148203 | ZNF738 | zinc finger protein 738 | NM_001355237.2 | 33.4% | 30.7% | (many diffs) |
| 9 | human | 284443 | ZNF493 | zinc finger protein 493 | NM_001076678.3 | 11.7% | 9.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 477
- ORF length:
- 411
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA CGACCTGAGG TATGGAGTGT ATCCTGTCAA GGGGGCAAGT GGATACCCTG 121 GGGCTGAGAG GAATCTTCTG GAGTACTCTT ATTTTGAAAA GGGGCCGTTG ACATTTAGGG 181 ATGTGGTCAT AGAATTCTCT CAGGAGGAGT GGCAATGCCT GGACACTGCT CAGCAAGATT 241 TGTATAGGAA AGTGATGTTA GAGAACTTCA GAAACCTGGT GTTCTTGGGT ATTGATGTCT 301 CTAAGCCAGA TCTGATCACC TGTCTGGAGC AAGGAAAAGA TCCCTGGAAT ATGAAGAGAC 361 ACAGTATGGT AGCCACACCC CCAGAAAGTG GGGTATTGAA ATTTCCTACT ATAATTATAT 421 TGCTGTCTAG GTGTTTCTTC CAGTCTGTCA ATATTTGCTT TATATATTTG GAACCTTACC 481 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 541 aac